View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4910_low_45 (Length: 238)
Name: NF4910_low_45
Description: NF4910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4910_low_45 |
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| [»] chr4 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 17 - 238
Target Start/End: Complemental strand, 52165623 - 52165402
Alignment:
| Q |
17 |
aacttccggtatgactattaccacagtgtttaacccagagatcgttcatgcctacaaactgtttgccaaaacgttcagcccagaaaagattagagttacc |
116 |
Q |
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| T |
52165623 |
aacttccggtatggctattaccacagtgtttaacccaaagatcgttcatgcctacaaactgtttgccaaaacgttcagcccagaaaagattagagttacc |
52165524 |
T |
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| Q |
117 |
ttcaaaagcgctaacgatatcatcagggtggatttctggtaggacccattcctttttgctccatacacctgaaccataaggccaagtggttttacccacg |
216 |
Q |
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| T |
52165523 |
ttcaaaagcgctaacgatatcatcagggtggatttctggtaggacccattcctttttgctccatacacctgaaccataaggccaagtggttttacccacg |
52165424 |
T |
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| Q |
217 |
cgcgaatcgaataggttgcgcc |
238 |
Q |
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| T |
52165423 |
cgcgaatcgaataggttgcgcc |
52165402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 25 - 238
Target Start/End: Complemental strand, 42663523 - 42663310
Alignment:
| Q |
25 |
gtatgactattaccacagtgtttaacccagagatcgttcatgcctacaaactgtttgccaaaacgttcagcccagaaaagattagagttaccttcaaaag |
124 |
Q |
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| T |
42663523 |
gtatgactaataccacaatgcttaacccacaaatcactcatgcctagaaactgtttgccaaaacgttcagcccaaaaaagattagaattaccttcaaaag |
42663424 |
T |
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| Q |
125 |
cgctaacgatatcatcagggtggatttctggtaggacccattcctttttgctccatacacctgaaccataaggccaagtggttttacccacgcgcgaatc |
224 |
Q |
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| T |
42663423 |
cactaacaatatcatcatcatcgatctcaggcaaaacccattcctttttgctccaaacaccagacccataaggccatgtagttttaccgacgcgtgaatc |
42663324 |
T |
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| Q |
225 |
gaataggttgcgcc |
238 |
Q |
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||| ||||| |||| |
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| T |
42663323 |
gaagaggttacgcc |
42663310 |
T |
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