View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4910_low_47 (Length: 236)
Name: NF4910_low_47
Description: NF4910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4910_low_47 |
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Alignment Details
Target: chr7 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 21874832 - 21875027
Alignment:
| Q |
1 |
ctccatctaaaatcaattgacctagttaatacatacaaatgcataattttgacacgtaatatctttaattatctattaacaaaaacataaagaaaaaagt |
100 |
Q |
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| T |
21874832 |
ctccatctaaaatcaattgacctagttgatacatacaaatgcataattttgatgcgtaatatctttaattatctattaacaaaaacataaagaaaaaagt |
21874931 |
T |
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| Q |
101 |
tgatattttataaatgttcatcgagataaatctgaaattatataagctatcattgaactttgtataaaatattttgtttagtccaagatttagaac |
196 |
Q |
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| T |
21874932 |
tgatattttataaatgttcatcgagataaatctgaaattatataagctatcattgaactttgtataaaatattttgtttagtccaagatttagaac |
21875027 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 86
Target Start/End: Original strand, 8340516 - 8340564
Alignment:
| Q |
38 |
aatgcataattttgacacgtaatatctttaattatctattaacaaaaac |
86 |
Q |
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| T |
8340516 |
aatgtataattttgccatttaatatatttaattatctattaacaaaaac |
8340564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 85
Target Start/End: Original strand, 9445318 - 9445365
Alignment:
| Q |
38 |
aatgcataattttgacacgtaatatctttaattatctattaacaaaaa |
85 |
Q |
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|||||| |||||||||| |||||||||||| |||||||||||||||| |
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| T |
9445318 |
aatgcacaattttgacatttaatatctttaaatatctattaacaaaaa |
9445365 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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