View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4910_low_49 (Length: 233)
Name: NF4910_low_49
Description: NF4910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4910_low_49 |
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Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 6 - 220
Target Start/End: Original strand, 4383589 - 4383803
Alignment:
| Q |
6 |
gtgagaagaacctaatgacaaatgatggaaatacttctatcagctataaaacctaaattgttttgcaaatgattctgttttcatcattacatctgggcag |
105 |
Q |
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| T |
4383589 |
gtgataagaacctaatgacaaatgatggaaattcttctatcagctataaaacctaaattgttttgcaaatgattctgttttcatcattacatctgggcag |
4383688 |
T |
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| Q |
106 |
tgacctgcggtgtacgacttgtattcactgatagtcgatcaagcatagcaaagcgagtagagctaaaagtgcaacgagcacaggaaggtaatcttgcaat |
205 |
Q |
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| T |
4383689 |
tgacctgcggtttacgacttgtattcactgatagtcgatcaagcatagcaaagcgagtagagctaaaagtgcaacgagcacaggaaggtaatcttgcaat |
4383788 |
T |
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| Q |
206 |
ggaattgtagtattt |
220 |
Q |
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| T |
4383789 |
ggaattgtagtattt |
4383803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 14 - 80
Target Start/End: Original strand, 4768774 - 4768841
Alignment:
| Q |
14 |
aacctaatgacaaatgatggaaatacttctatcagcta-taaaacctaaattgttttgcaaatgattc |
80 |
Q |
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||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||| |
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| T |
4768774 |
aacctaatgacaaatgatggaaatacttctatcaggtactaaaagataaattgttttgcaaatgattc |
4768841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 156 - 204
Target Start/End: Original strand, 4385434 - 4385482
Alignment:
| Q |
156 |
aagcgagtagagctaaaagtgcaacgagcacaggaaggtaatcttgcaa |
204 |
Q |
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||||||| |||||||||||||||||||||||| |||||||||||||||| |
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| T |
4385434 |
aagcgagcagagctaaaagtgcaacgagcacatgaaggtaatcttgcaa |
4385482 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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