View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4910_low_7 (Length: 465)
Name: NF4910_low_7
Description: NF4910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4910_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 19 - 454
Target Start/End: Original strand, 51800281 - 51800718
Alignment:
| Q |
19 |
agattactatggcctaactcacctcaaaatcgaagagttaagatnnnnnnnn-ctggtatgttattcttctaacaagcatcaattacttttgattggagt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51800281 |
agattactatggcctaactcacctcaaaatcgaagagttaagataaaaaaaaactggtatgttattcttctaacaagcatcaattacttttgattggagt |
51800380 |
T |
|
| Q |
118 |
gatttcttagtaaaaatcatgtattccacccttttttatt-gtctgttgataagagaagcgaatatcacaagaatatatgatagatattatacaattctg |
216 |
Q |
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||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51800381 |
gatttcttagtaaaaatcatgtattccacccttttttttttgtctgttgataagagaagcgaatatcacaagaatatatgatagatattatacaattctg |
51800480 |
T |
|
| Q |
217 |
tttataagtctgacttaatttagttatcatttatagtccatcaaacaatagaatatgcagtgattattaaatgaataaatctgctgttgtatgctcctat |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51800481 |
tttataagtctgacttaatttagttatcatttatagtccatcaaacaatagaatatgcagtgattattaaatgaataaatctgctgttgtatgctcctat |
51800580 |
T |
|
| Q |
317 |
tgtacttaaacaggaacatgcctgtcctgatattagcttcttctcacagccaagcatgctttataagttgataccttctgtctttttctttgagaatgaa |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51800581 |
tgtacttaaacaggaacatgcctgtcctgatattagcttcttctcacagccaagcatgctttataagttgataccttctgtctttttctttgagaatgaa |
51800680 |
T |
|
| Q |
417 |
aatactattcttcttatatatcgaaccttgtcaccttt |
454 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
51800681 |
aatactattcttcttatatatcgaaccttgtcaccttt |
51800718 |
T |
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