View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4910_low_9 (Length: 435)
Name: NF4910_low_9
Description: NF4910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4910_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 311; Significance: 1e-175; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 19 - 422
Target Start/End: Complemental strand, 9456233 - 9455847
Alignment:
| Q |
19 |
gaacgatgcatttggtgcggagtcttcacgagatatcagtaataaacagttacttatgaccaaacccgtcatgtggggacacaaccattaactcttgttt |
118 |
Q |
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| T |
9456233 |
gaacgatgcatttggtgcggagtcttcacgagatatcagtaataaacagttacttatgaccaaacccgtcatgtggggacacaaccattaactcttgttt |
9456134 |
T |
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| Q |
119 |
tcactcaattcaataaccttaaaactccgatattattcttattatccccgaacactgcatgtacnnnnnnnnncacaatcatttcactctgttgtttcaa |
218 |
Q |
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| T |
9456133 |
tcactcaattcaataaccttaaaactccgatattattcttattatccccgaacactgcatgtacaaaaaaaa-cacaatcatttcactctgttgtt---- |
9456039 |
T |
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| Q |
219 |
acaagttttaagattcatcaaattcttcaaatcgtgtgtattttgattgaaggtagaacaaaatggccgaaggtggtcatcaattagcagacaaaacaga |
318 |
Q |
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| T |
9456038 |
------------attcatcaaattcttcaaatcgtgtgtattttgattgaaggtagaacaaaatggccgaaggtggtcatcaattagcagacaaaacaga |
9455951 |
T |
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| Q |
319 |
gttcacagaatgttggcgaagaacaaccgaatcaccgtatctcatgcgtcttgctttatcagctggtattggtggccttttattcggttacgatacaggt |
418 |
Q |
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| T |
9455950 |
gttcacagaatgttggcgaagaacaaccgaatcaccgtatctcatgcgtcttgctttatcagctggtattggtggtcttttatttggttacgatacaggt |
9455851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 252 - 375
Target Start/End: Complemental strand, 9444307 - 9444183
Alignment:
| Q |
252 |
gtgtgtattttgattgaaggtagaacaaaa-tggccgaaggtggtcatcaattagcagacaaaacagagttcacagaatgttggcgaagaacaaccgaat |
350 |
Q |
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| T |
9444307 |
gtgtgtattttgattgaaggtagaaaaaaaatggctgagggtggtcatccattagcagacaagacagagttcacagaatgttggcgaagaacagctgaat |
9444208 |
T |
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| Q |
351 |
caccgtatctcatgcgtcttgcttt |
375 |
Q |
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| T |
9444207 |
caccttacctcatgcgtcttgcttt |
9444183 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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