View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4911-Insertion-1 (Length: 766)
Name: NF4911-Insertion-1
Description: NF4911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4911-Insertion-1 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 353; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 359 - 766
Target Start/End: Complemental strand, 2752200 - 2751797
Alignment:
| Q |
359 |
atatactcgaaacctgaatgggtagctgaagagcgaagtttctgacttggaaattatgaataaataatcggtgaggaagaaactatagttgaacctaggc |
458 |
Q |
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| T |
2752200 |
atatactcgaaacctga-tgggtagctgaagagcgaagtttctgacttggaaattatgaataaataatcggtgaggaagaaactagagttgaacctaggc |
2752102 |
T |
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| Q |
459 |
tgggaaccagtttagaccatatataaggcctttttaaagcttccaaaaataattaggtaacgagggattgatgaagcaggttggctaagtcacatacatg |
558 |
Q |
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| T |
2752101 |
tgggagccagtttagaccatatacaaggcctttttaaagcttccaaaaataattaggtaacgagggat-gatgaagccagttggctaagtcacatacatg |
2752003 |
T |
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| Q |
559 |
tcctcttgattaactttgaatcaacttaaatataatgaaagcagaattaatcttggttagcagaataaaaatattcattcaaatgaggatattttgatta |
658 |
Q |
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| T |
2752002 |
tcctcttgattaactttgaatcaacttaaata--atgaaagcagaattaatcttggttagcaaaataaaaatattcattcaaatgaggatattttgatta |
2751905 |
T |
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| Q |
659 |
ttacatggacagaaacttcaaaatgacgtctgaatggagtccgtgtataggttgtgattacaaggttttgaatgaaaggttctacagccaaattataata |
758 |
Q |
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| T |
2751904 |
ttacatggacagaaacttcaaaatgacgtctgaatggagtccgtgtataggttgtgattacaaggttttgaatgaaaggttctacagccatattataata |
2751805 |
T |
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| Q |
759 |
acatacta |
766 |
Q |
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| T |
2751804 |
acatacta |
2751797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 8 - 333
Target Start/End: Complemental strand, 2752529 - 2752199
Alignment:
| Q |
8 |
gaaattattaataaaactaacttcattcgtgaaacaccaagtttagagtaactgttggagtggttgtagctatatattgttttgtatttggtctgtgtga |
107 |
Q |
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| T |
2752529 |
gaaattattaataaaactaacttcattcgtgaaacaccaagtttagagtaactgttggagtggttgtagctat----tgttttgtatttggtctgtgtga |
2752434 |
T |
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| Q |
108 |
gtgatggtaagctcttgcacatgttgagtgattgagtctagtgtagcaga-------------taaggaaataggaagtggcttagattcttccatggtt |
194 |
Q |
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| T |
2752433 |
gtgatggtaagctcttgcacatgttgagtgattgagtctagtgtagcagcagaagggaagaagttaggaaataggaagtggcttagattctgccaaggta |
2752334 |
T |
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| Q |
195 |
gctcaaccaattagtgtttctgagttaggaagagtcctgtggtgtggaagtaagtaggaatgacttcaacacacaatatgtgggttgatggaatgtgatc |
294 |
Q |
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| T |
2752333 |
gctcaaccaattagtgtttctgagttaggaagagtcctgtggtgtggaagta----ggaatgacttcaacacacaatatgtgggttgatagaatgtgatc |
2752238 |
T |
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| Q |
295 |
cttcaaaaagaatgtggctgcaaatgaatttggagtgat |
333 |
Q |
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| T |
2752237 |
cttcaaaaagaatgtggctgcaaatgaatttggagtgat |
2752199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 679 - 736
Target Start/End: Complemental strand, 2800491 - 2800434
Alignment:
| Q |
679 |
aaatgacgtctgaatggagtccgtgtataggttgtgattacaaggttttgaatgaaag |
736 |
Q |
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| T |
2800491 |
aaatgatgtctgaatggagtccaaatataggtcttgattacaaggttttgaatcaaag |
2800434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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