View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4911-Insertion-2 (Length: 581)
Name: NF4911-Insertion-2
Description: NF4911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4911-Insertion-2 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 554; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 554; E-Value: 0
Query Start/End: Original strand, 8 - 581
Target Start/End: Complemental strand, 55178413 - 55177840
Alignment:
| Q |
8 |
cgttgaaccacccacgcatcgctcctctgctagggatttgtattagagataagacttcgatatctgtttatgattatttcccccaaggaaccttagacca |
107 |
Q |
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| T |
55178413 |
cgttgaaccacccacgcatcgctcctctgctagggatttgcattagagatgagactttgatatctgtttatgattatttcccccaaggaaccttagacca |
55178314 |
T |
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| Q |
108 |
aaatctacgcggttagtcctactaatatttcttctcttttcacttatcattgtaactactagcctgtacacactaaatgcttttctgataaaaatggaag |
207 |
Q |
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| T |
55178313 |
aaatctacgcggttagtcctactaatatttcttctcttttcacttatcattgtaactactagcctgtacacactaaatgcttttctgataaaaatggaag |
55178214 |
T |
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| Q |
208 |
ttacaaaattgaatgtaattaattaaaaatagaattagtatatatacactagaaagtggatatgatatattatttactgatgaaattggaaataatggat |
307 |
Q |
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| T |
55178213 |
ttacaaaattgaatgtaattaattaaaaatagaattagtatatatacactagaaagtggatatgatatattatttactgatgaaattggaaataatggat |
55178114 |
T |
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| Q |
308 |
ataggtaagaacaaggatgaatctatgttgacatgggaaaacagatttaaggtagctgttgggattggtgaagcactgaattacctgcacaagcacaacc |
407 |
Q |
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| T |
55178113 |
ataggtaagaacaaggatgaatctatgttgacatgggaagacagatttaaggtagctgttgggattggtgaagcactgaattacctgcacaagcacaacc |
55178014 |
T |
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| Q |
408 |
aaacctccaagcctattatacatagagacgtcaagtcttccaacattcttctttctgaagggtttgagccacatgtaatcataactttgatactattaac |
507 |
Q |
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| T |
55178013 |
aaacctccaagcctattatacatagagacgtcaagtcttccaacattcttctttctgaagggtttgagccacatgtaatcataactttgatactattaac |
55177914 |
T |
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| Q |
508 |
tagaattgataattaatatcattttatgtttgaaatttttgattgtcatgtgacatgtacacattcgttattat |
581 |
Q |
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| T |
55177913 |
tagaattgataattaatatcattttatgtttgaaatttttgattgtgatgtgacatgtacacattcgttattat |
55177840 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 425 - 488
Target Start/End: Complemental strand, 27670576 - 27670513
Alignment:
| Q |
425 |
atacatagagacgtcaagtcttccaacattcttctttctgaagggtttgagccacatgtaatca |
488 |
Q |
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| T |
27670576 |
atacatagagatgtcaagtcttcaaacattcttctttccaaggagcttgagccacaagtaatca |
27670513 |
T |
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