View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4911-Insertion-5 (Length: 361)
Name: NF4911-Insertion-5
Description: NF4911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4911-Insertion-5 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
| [»] chr5 (2 HSPs) |
| |
|
| [»] chr8 (1 HSPs) |
| |
|
| [»] scaffold0131 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 8 - 361
Target Start/End: Original strand, 4487592 - 4487946
Alignment:
| Q |
8 |
tgtataaaaccagctggttcagttttgacatacaaaccaaaaaatgaaattgaagggaataactacctctgaaatagcgttggaagttttgaaagatccc |
107 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4487592 |
tgtataaaaccaggtggttcagttttgacatacaaaccaaaaaatgaaattgaagggaataactacctctgaaatagcgttggaagttttgaaagatccc |
4487691 |
T |
|
| Q |
108 |
taaaacctcctcctaaattaacttcactttcatgacctgaaaaa-atatcatacatttagaaacnnnnnnnttgctatcatattttaatgcatcagaaaa |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||||| |
|
|
| T |
4487692 |
taaaacctcctcctaaattaacttcactttcatgacctgaaaaagatatcatacatttaaaaacaaaaaaattgctatcatattttaatgcatcagaaaa |
4487791 |
T |
|
| Q |
207 |
cttgaaggaaatacgattttcgatctgagaaagaaaatatgcctaccaatcagattttatgttcttcatcaaaaatcgctatcatgttttaatatcatac |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4487792 |
tttgaaggaaatacgattttcgatctgagaaagaaaatatgcctaccaatcagattttatgttcttcatcaaaaatcgctatcatgttttaatatcatac |
4487891 |
T |
|
| Q |
307 |
acttagaaaccaacgtttgcgtatagtcacaccttcactcagcggggtttaactt |
361 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4487892 |
acttagaaaccaacgtttgcgtatagtcacaccttcactcagcggggtttaactt |
4487946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 8 - 361
Target Start/End: Original strand, 22067081 - 22067446
Alignment:
| Q |
8 |
tgtataaaaccagctggttcagttttgacatacaaaccaaaaaatga-----------aattgaagggaataactacctctgaaatagcgttggaagttt |
96 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
22067081 |
tgtataaaaccggctggttcagttttgacatacaaaccaaaaaatgattaaaaaatgaaattgaagggaataactacctctgaaacagcgttggaagttt |
22067180 |
T |
|
| Q |
97 |
tgaaagatccctaaaacctcctcctaaattaacttcactttcatgacctgaaaaa-atatcatacatttagaaacnnnnnnnttgctatcatattttaat |
195 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
22067181 |
tgaaagatccctaaaacctcctcctaaattaacttcactttcatgacctgaaaaagatatcatacatttagaaacagaataattgctatcatattttaat |
22067280 |
T |
|
| Q |
196 |
gcatcagaaaacttgaaggaaatacgattttcgatctgagaaagaaaatatgcctaccaatcagattttatgttcttcatcaaaaatcgctatcatgttt |
295 |
Q |
| |
|
||||||||||| |||||||||||| ||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22067281 |
gcatcagaaaatttgaaggaaataagatttccgatctgaaaaagaaaacatgcctaccaatcagattttatgttcttcatcaaaaatcgctatcatgttt |
22067380 |
T |
|
| Q |
296 |
taatatcatacacttagaaaccaacgtttgcgtatagtcacaccttcactcagcggggtttaactt |
361 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||| |||||||||||| |||||||||||| |
|
|
| T |
22067381 |
taatatcatacacttagaaaccaacatttgcgtatagtctgaccttcactcagtggggtttaactt |
22067446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 8 - 361
Target Start/End: Original strand, 19023182 - 19023547
Alignment:
| Q |
8 |
tgtataaaaccagctggttcagttttgacatacaaaccaaaaaatga-----------aattgaagggaataactacctctgaaatagcgttggaagttt |
96 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
19023182 |
tgtataaaaccggctggttcagttttgacatacaaaccaaaaaatgattaaaaaatgaaattgaagggaataactacctttgaaacagcgttggaagttt |
19023281 |
T |
|
| Q |
97 |
tgaaagatccctaaaacctcctcctaaattaacttcactttcatgacctgaaaaa-atatcatacatttagaaacnnnnnnnttgctatcatattttaat |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
19023282 |
tgaaagatccctaaaacctcctcctaaattaacttcactttcataacctgaaaaagatatcatacatttagaaacagaaaaattgctatcatattttaat |
19023381 |
T |
|
| Q |
196 |
gcatcagaaaacttgaaggaaatacgattttcgatctgagaaagaaaatatgcctaccaatcagattttatgttcttcatcaaaaatcgctatcatgttt |
295 |
Q |
| |
|
||||||||||| |||||||||||| ||||| |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
19023382 |
gcatcagaaaatttgaaggaaataagatttccgatctgaaaaagaaaacatgcctaccaatcagattttatgttcttcatcaaaaatcgctatcatgatt |
19023481 |
T |
|
| Q |
296 |
taatatcatacacttagaaaccaacgtttgcgtatagtcacaccttcactcagcggggtttaactt |
361 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| |||||| |||||||||||| |||||||||||| |
|
|
| T |
19023482 |
taatatcacacacttagaaaccaacgtttgcgaatagtctgaccttcactcagtggggtttaactt |
19023547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 8 - 361
Target Start/End: Original strand, 22621384 - 22621757
Alignment:
| Q |
8 |
tgtataaaaccagctggttcagttttgacatacaaaccaaaa------------aatgaaattgaagggaataactacctctgaaatagcgttggaagtt |
95 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | ||||||||||| |
|
|
| T |
22621384 |
tgtataaaaccagctggttcagttttgacatacaaaccaaaaaattattaaaaaaatgaaattgaagggaataactacctctgaaacaacgttggaagtt |
22621483 |
T |
|
| Q |
96 |
ttgaaagatccctaaaacctcctcctaaattaacttcactttcatgacctgaaaaa-atatcatacatttagaaacnnnnnnnttgctatcatattttaa |
194 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||||||||||||| |
|
|
| T |
22621484 |
ttgaaagatccctaaaacctcctcctaaattaacttcactttcatgacctgaaaaagatatcatacatttagaaatagaaaaatcgctatcatattttaa |
22621583 |
T |
|
| Q |
195 |
tgcatcagaaaacttgaaggaaatacgattttcgatctgagaaagaaaa------tatgcctaccaatcagattttatgttcttcatcaaaaatcgctat |
288 |
Q |
| |
|
|||||||| ||| ||||||||||| ||||| ||||||| ||| |||| ||||||| | ||||| ||||||||||||||||||||| ||||||| |
|
|
| T |
22621584 |
tgcatcaggaaatatgaaggaaataagatttcagatctgaaaaaaaaaaaaaaactatgcctgctaatcaaattttatgttcttcatcaaaattcgctat |
22621683 |
T |
|
| Q |
289 |
catgttttaatatcatacacttagaaaccaacgtttgcgtatagtcacaccttcactcag-cggggtttaactt |
361 |
Q |
| |
|
||||||||||||||||||| ||||||||||| || ||||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
22621684 |
catgttttaatatcatacatttagaaaccaaagtctgcgtatagtcacaccttctctcagttggggtttaactt |
22621757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0131 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0131
Description:
Target: scaffold0131; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 240 - 280
Target Start/End: Complemental strand, 13286 - 13246
Alignment:
| Q |
240 |
aaaatatgcctaccaatcagattttatgttcttcatcaaaa |
280 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13286 |
aaaatatgcctaccaatcagattttatgttcttcatcaaaa |
13246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 58 - 147
Target Start/End: Original strand, 43255044 - 43255134
Alignment:
| Q |
58 |
tgaagggaataactacctctgaaatagcgttggaagttttgaaagatcc-ctaaaacctcctcctaaattaacttcactttcatgacctga |
147 |
Q |
| |
|
||||||||| |||||||||||||| || ||||||||| |||| | | | | || | |||||||||||||||||||||||||||||||||| |
|
|
| T |
43255044 |
tgaagggaaaaactacctctgaaacagtgttggaagtactgaatgttgctccaatatctcctcctaaattaacttcactttcatgacctga |
43255134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University