View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4911-Insertion-7 (Length: 292)
Name: NF4911-Insertion-7
Description: NF4911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4911-Insertion-7 |
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| [»] scaffold0238 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: scaffold0238 (Bit Score: 181; Significance: 8e-98; HSPs: 1)
Name: scaffold0238
Description:
Target: scaffold0238; HSP #1
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 108 - 292
Target Start/End: Original strand, 13008 - 13192
Alignment:
| Q |
108 |
gacaaccaaagaggaaaagattaatgtgtgccatgctaagttgattttcttcattttcttagtaaatcattttcccacatatcttcttcagctccacgcc |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
13008 |
gacaaccaaagaggaaaagattaatgtgtgccatgctaagttgattttcttcattttcttagtaaatcattttcccacatatcttcttcaactccacgcc |
13107 |
T |
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| Q |
208 |
tctcatttgcttctatcatcttcttgatttgttctcctctatcttagatgcatgatcttaaaatggtcatttatctcctctatta |
292 |
Q |
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| T |
13108 |
tctcatttgcttctatcatcttcttgatttgttctcctctatcttagatgcatgatcttaaaatggtcatttatctcctctatta |
13192 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 108 - 292
Target Start/End: Original strand, 10453172 - 10453356
Alignment:
| Q |
108 |
gacaaccaaagaggaaaagattaatgtgtgccatgctaagttgattttcttcattttcttagtaaatcattttcccacatatcttcttcagctccacgcc |
207 |
Q |
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| T |
10453172 |
gacaaccaaagaggaaaagattaatgtgtgccatgctcagttgattttcttcattttcttagtaaatcattttcccacatatcttcttcagctccacgcc |
10453271 |
T |
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| Q |
208 |
tctcatttgcttctatcatcttcttgatttgttctcctctatcttagatgcatgatcttaaaatggtcatttatctcctctatta |
292 |
Q |
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| T |
10453272 |
tctcatttgcttctgtcatcttcttgatttgttctcctctatcttagatgcatgatcttaaaatggtcatttatctcctctatta |
10453356 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 108 - 292
Target Start/End: Complemental strand, 12603932 - 12603748
Alignment:
| Q |
108 |
gacaaccaaagaggaaaagattaatgtgtgccatgctaagttgattttcttcattttcttagtaaatcattttcccacatatcttcttcagctccacgcc |
207 |
Q |
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| T |
12603932 |
gacaaccaaagaggaaaagattaatgtgtgccatgctaagttgattttcttcattttcttagtaaatcattttcccacatatcttcttcaactccacgcc |
12603833 |
T |
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| Q |
208 |
tctcatttgcttctatcatcttcttgatttgttctcctctatcttagatgcatgatcttaaaatggtcatttatctcctctatta |
292 |
Q |
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| T |
12603832 |
tctcatttgcttctatcatcttcttgatttgttctcctctatcttagatgcatgatcttaaaatggtcacttatctcctctatta |
12603748 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 108 - 291
Target Start/End: Original strand, 23261701 - 23261887
Alignment:
| Q |
108 |
gacaaccaaagaggaaaagattaatgtgtgccatgctaagttgattttcttcattttcttagtaaatcattttcccacatatcttcttcagctccacgcc |
207 |
Q |
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||||||| ||| |||||||||||| |||||||||||| | |||||||| |||||||| | ||||||| ||||||||||||||||||||||||||||||| |
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| T |
23261701 |
gacaaccgaagtggaaaagattaacgtgtgccatgctcaattgattttgttcattttataagtaaataattttcccacatatcttcttcagctccacgct |
23261800 |
T |
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| Q |
208 |
tctcatttgcttct----atcatcttcttgatttgttctcctctatcttagatgcatgatcttaaaatggtcatttatctcctctatt |
291 |
Q |
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| T |
23261801 |
tctcatttgcttcttcaggtcaacttcttga-ttgatctcctctattttagaagcatgatcttaaaacggtcatttatctcctctatt |
23261887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 108 - 291
Target Start/End: Complemental strand, 56478246 - 56478060
Alignment:
| Q |
108 |
gacaaccaaagaggaaaagattaatgtgtgccatgctaagttgattttcttcattttcttagtaaatcattttcccacatatcttcttcagctccacgcc |
207 |
Q |
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||||||| ||| |||||||||||| |||||||||||| | |||||||| |||||||| | ||||||| ||||||||||||||||||||||||||||||| |
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| T |
56478246 |
gacaaccgaagtggaaaagattaacgtgtgccatgctcaattgattttgttcattttttaagtaaattattttcccacatatcttcttcagctccacgct |
56478147 |
T |
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| Q |
208 |
tctcatttgcttct----atcatcttcttgatttgttctcctctatcttagatgcatgatcttaaaatggtcatttatctcctctatt |
291 |
Q |
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|||||||||||||| ||| |||||||| ||| |||||||||| ||||| |||||||||||| | |||||||||||||||||||| |
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| T |
56478146 |
tctcatttgcttcttcaggtcaacttcttga-ttgatctcctctattttagaagcatgatcttaatacggtcatttatctcctctatt |
56478060 |
T |
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