View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4911-Insertion-9 (Length: 176)
Name: NF4911-Insertion-9
Description: NF4911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4911-Insertion-9 |
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| [»] chr4 (1 HSPs) |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 157; Significance: 9e-84; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 157; E-Value: 9e-84
Query Start/End: Original strand, 8 - 176
Target Start/End: Original strand, 26072645 - 26072813
Alignment:
| Q |
8 |
agtttagcaatgatcattttagccttttccaccccatacatccaaccaaaacacaaatcaagatactccatcttgtacctaggatcaagataaacagcta |
107 |
Q |
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| T |
26072645 |
agtttagcaattatcattttagccttttccaccccatacatccaaccaaaacacaaatcaagatactccatcttgtacctaggatcaagataaacagcta |
26072744 |
T |
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| Q |
108 |
caaacaacagattattgatattctcatcactccaatacttttcaaatttagctttcatagttaatgcca |
176 |
Q |
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| T |
26072745 |
caaacaacagataattgatattctcatcactccaatacttttcaaatttagctttcatagtcaatgcca |
26072813 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 153; Significance: 2e-81; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 153; E-Value: 2e-81
Query Start/End: Original strand, 8 - 176
Target Start/End: Complemental strand, 1671057 - 1670889
Alignment:
| Q |
8 |
agtttagcaatgatcattttagccttttccaccccatacatccaaccaaaacacaaatcaagatactccatcttgtacctaggatcaagataaacagcta |
107 |
Q |
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| T |
1671057 |
agtttagcaattatcattttagccttttccaccccatacatccaaccaaaacaaaaatcaagatactccatcttgtacctaggatcaagataaacagcta |
1670958 |
T |
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| Q |
108 |
caaacaacagattattgatattctcatcactccaatacttttcaaatttagctttcatagttaatgcca |
176 |
Q |
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| T |
1670957 |
caaacaacagataattgatattctcatcactccaatacttttcaaatttagctttcatagtcaatgcca |
1670889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 124; E-Value: 5e-64
Query Start/End: Original strand, 41 - 176
Target Start/End: Original strand, 44271455 - 44271590
Alignment:
| Q |
41 |
ccatacatccaaccaaaacacaaatcaagatactccatcttgtacctaggatcaagataaacagctacaaacaacagattattgatattctcatcactcc |
140 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
44271455 |
ccatacatccaaccaaaacacaaatcaagatactccatcttgtacctaggatcaatataaacagctacaaacaacagataattgatattctcatcactcc |
44271554 |
T |
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| Q |
141 |
aatacttttcaaatttagctttcatagttaatgcca |
176 |
Q |
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| T |
44271555 |
aatacttttcaaatttagctttcatagtcaatgcca |
44271590 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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