View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4911_low_1 (Length: 689)
Name: NF4911_low_1
Description: NF4911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4911_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 510; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 510; E-Value: 0
Query Start/End: Original strand, 14 - 673
Target Start/End: Complemental strand, 13140538 - 13139875
Alignment:
| Q |
14 |
atcataagagacggttagagcgggtgctatgaaattgatgtggtggttgacggtggttcttgactagtggagagtggtgctcgtacaaagatacttcaat |
113 |
Q |
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| T |
13140538 |
atcataagagacagttggagcgggtgctatgaaattgatgtggtggttgacggtggttcttcactagtgcagagtggtgttcgtacaaagatacttcaat |
13140439 |
T |
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| Q |
114 |
ttccaagctacttagacctcaatgtgttttgatgnnnnnnncaaaatgagaatatgtacttgattttacagttgtttgctctatttgtagatttttagtt |
213 |
Q |
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| T |
13140438 |
ttccaagctactgagacctcaatgtgttttaatgtttttttcaaaatgagaatatgtacttgatttgatagttgtttgctctatttgtagatttttagat |
13140339 |
T |
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| Q |
214 |
ggacgttaaatatgggcattttgacgaa----tttactcaaagtttgggaaggagataagcgaataatttgatttaaggcgggannnnnnnncatttggt |
309 |
Q |
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| T |
13140338 |
ggacgataaatatgggcattttgacgaaagcatttactcaaagttcgggaaggagataagcgaataatttgatttaaggagggattttttttcatttggt |
13140239 |
T |
|
| Q |
310 |
agaaattttggcagctcatgcatggtgtagcaaagatatgtgcttatgactcaaggcaattttcgaaagaaatcatgggaatgagtgttttggccatgac |
409 |
Q |
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| T |
13140238 |
agaaattttggcagctcatgcatggtgtagcaaatagatgtgcttatgactcaaggcatttttcgaaagaaatcatgggaatgagtgttttggccatgat |
13140139 |
T |
|
| Q |
410 |
tgtaattgtgatctgtttgccagaaccaaggggtctttctgtggaaaccttcacgaacaatcgttgttttttgatggtttttctgcttctcatcgctgct |
509 |
Q |
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| T |
13140138 |
tgtaattgtgatctgtttgccagaaccaaggggtctttctgtggaaaccttcacgaacaatcgttgttttttgatggtttttccgcttctcaccgctgct |
13140039 |
T |
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| Q |
510 |
ctttccacacctccggatatctgatgccaaatcgtcgcctgtttcctaatttcttcgataattgagttgactatctttgtggcatcgattgtacaagttc |
609 |
Q |
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| T |
13140038 |
ctttccacacctccggatatctgatgccaaatcgtcgcatgtttccttatttcttcgataattgagttgactatctttgtggcatcgattgtacaagttc |
13139939 |
T |
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| Q |
610 |
gcgaaaaagctggacgactggaatgagggaaagcggctcaatagaaaaatgggggtattacttg |
673 |
Q |
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| T |
13139938 |
gcgaaaaagctggacgactggaatgagggaaagcggctcaactgaaaaatgggggtattacttg |
13139875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 7e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 550 - 608
Target Start/End: Original strand, 1426806 - 1426864
Alignment:
| Q |
550 |
gtttcctaatttcttcgataattgagttgactatctttgtggcatcgattgtacaagtt |
608 |
Q |
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| T |
1426806 |
gtttccttatttcttcgataattgagttgactatctttgtggcattgattgtacaagtt |
1426864 |
T |
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