View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4911_low_12 (Length: 241)
Name: NF4911_low_12
Description: NF4911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4911_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 31860762 - 31860542
Alignment:
| Q |
1 |
atcaaagtgatttgcttccaattattttgacattattatggatagctaatatttatnnnnnnnnnnnnnnnnntcatataaactgtgcatttgtaggtat |
100 |
Q |
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| T |
31860762 |
atcaaagtgatttgcttccaattattttgacattattatggatagctaatatttataaaaaaaatttaaaaa-tcatataaactgtgcatttgtaggtat |
31860664 |
T |
|
| Q |
101 |
tgacccgagtaaatgggattctgtatttgaaagctttgagcaagctgatctatcaactactagactgtaagtgatttatatatgtnnnnnnnnnctatac |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
31860663 |
tgacccgagtaaatgggattctgtatttgaaagctttgagcaagctgatctatcaactactagactgtaagtgatttatatatgt-aaaaaaaactatac |
31860565 |
T |
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| Q |
201 |
aatttggcgaggtgttacctttg |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
31860564 |
aatttggcgaggtgttacctttg |
31860542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 94 - 171
Target Start/End: Original strand, 8868461 - 8868538
Alignment:
| Q |
94 |
taggtattgacccgagtaaatgggattctgtatttgaaagctttgagcaagctgatctatcaactactagactgtaag |
171 |
Q |
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|||||||||| || || |||||||||||||| ||||||||||||||||||||||||| |||||||||| ||||||||| |
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| T |
8868461 |
taggtattgatccaagcaaatgggattctgtgtttgaaagctttgagcaagctgatccatcaactactcgactgtaag |
8868538 |
T |
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