View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4911_low_14 (Length: 211)
Name: NF4911_low_14
Description: NF4911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4911_low_14 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 159; Significance: 7e-85; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 159; E-Value: 7e-85
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 8296999 - 8296789
Alignment:
| Q |
1 |
atattctatccttaacgtcagcttctcccaccttaacaattgataccttttccgttttgtctatttgatccccaccaaaacaaattcaacaatatttgca |
100 |
Q |
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| T |
8296999 |
atattttatcctcaacgttagcttctcccaccttaacagttgatacctttcgcgttttgtctatttgatccccaccaaaacaaattcaacaacatttgca |
8296900 |
T |
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| Q |
101 |
tctcctcccctaaagttgtcggaagtagaaaggaactcgttaattaagttggaatcaattgagaaactgatttagttagtacctctcttcttgcaatgga |
200 |
Q |
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|||||||||||||||||||||||||||||||| ||||| | || |||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| |
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| T |
8296899 |
tctcctcccctaaagttgtcggaagtagaaagaaactcataaaataagttggaatcaattgagaaactgatttaattagtacctctcttcctgcaatgga |
8296800 |
T |
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| Q |
201 |
taaatgttttc |
211 |
Q |
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||||||||||| |
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| T |
8296799 |
taaatgttttc |
8296789 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 38 - 190
Target Start/End: Complemental strand, 14344189 - 14344037
Alignment:
| Q |
38 |
aattgataccttttccgttttgtctatttgatccccaccaaaacaaattcaacaatatttgcatctcctcccctaaagttgtcggaagtagaaaggaact |
137 |
Q |
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| T |
14344189 |
aattgacaccttttccattatgtcgattcgatccccaccaaaatgaatttaacatattttaaatctcctcacctaaagttgtcaaaagtagaaataaact |
14344090 |
T |
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| Q |
138 |
cgttaattaagttggaatcaattgagaaactgatttagttagtacctctcttc |
190 |
Q |
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| T |
14344089 |
cataaaatatgttggtatcaattgagcaactgatttaataagtacctctcttc |
14344037 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 55 - 190
Target Start/End: Original strand, 15162472 - 15162609
Alignment:
| Q |
55 |
ttttgtctatttgatccccaccaaaacaaattcaacaatatttgcatctcctcccctaaagttgtcggaagtagaaaggaactcgt-taat-taagttgg |
152 |
Q |
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| T |
15162472 |
ttttgtctattcgatccccaccgataccaattcaacattttttgaatcttttctcctaaagttgtcgggagtataaaggaactcatacaatatatgttgg |
15162571 |
T |
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| Q |
153 |
aatcaattgagaaactgatttagttagtacctctcttc |
190 |
Q |
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| T |
15162572 |
aatcaattgagcaacgaacttaataagtacctctcttc |
15162609 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 93
Target Start/End: Original strand, 35055998 - 35056070
Alignment:
| Q |
22 |
cttctcccaccttaac-aattgataccttttccgttttgtctatttgatccccaccaaaacaaattcaacaat |
93 |
Q |
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| T |
35055998 |
cttctcccatcttaaccaatttattccttttccattttgtctattcgacccccaccaaaaagaattcaacaat |
35056070 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 190
Target Start/End: Original strand, 40731871 - 40732038
Alignment:
| Q |
23 |
ttctcccaccttaacaa-ttgataccttttccgttttgtctatttgatccccaccaaaacaaattcaacaatatttgcatctcctcccctaaagttgtcg |
121 |
Q |
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||||||||||||||| | ||||||||||| |||| |||||||||| |||| ||||||| |||||||| | |||||||| || ||| ||| |||| || |
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| T |
40731871 |
ttctcccaccttaaccagttgatacctttctcgttctgtctatttgttccctgccaaaacggattcaacattttttgcatc-ccccccttaaggttggcg |
40731969 |
T |
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| Q |
122 |
gaagtagaaaggaactcgttaattaagttggaatcaattgagaaactgatttagttagtacctctcttc |
190 |
Q |
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| T |
40731970 |
ggagtagaaaataactcatacaatatgttggaatcgattaagcaacatatttaataagtacctctcttc |
40732038 |
T |
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