View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4911_low_2 (Length: 604)
Name: NF4911_low_2
Description: NF4911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4911_low_2 |
 | |
|
| [»] scaffold0131 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 379; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 18 - 421
Target Start/End: Complemental strand, 4487596 - 4487193
Alignment:
| Q |
18 |
atacaaaaactggatttgttttggtgaattagttaagctggttttgaaccattgcatgtattaaaccagtctcaacttttggttttggttgtagtcaatt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4487596 |
atacaaaaactggatttgttttggtgaattagttaagctggttttgaaccattgcatgtattaaaccagtctcaacttttggttttggttgtagtcaatt |
4487497 |
T |
|
| Q |
118 |
tatgaatcttccattcaaaacttgtttttattttggtgttgtttgattacataatatgtatgttgagtattaattattgttacgtggcacaattgatctt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4487496 |
tatgaatcttccattcaaaacttgtttttattttggtgttgtttgattacataatatgtatgttgagtattaattattgttacgtggcacaattgatctt |
4487397 |
T |
|
| Q |
218 |
tatattgatataagagtagtagtgttgaattgatctagttatgtcctcnnnnnnncactttttgctagggggtatattttttgttgagaaaacataggcc |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4487396 |
tatattgatataagagtagtagtgttgaattgatctagttatgtcctcttttttacactttttgctagggggtatattttttgttgagaaaacataggcc |
4487297 |
T |
|
| Q |
318 |
gaggttatcgggtttctgttttgtgaattagattcttgtcttatcattttttctttcgaatggaacacaaactataggactgtgataggtgttgtgttgt |
417 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4487296 |
gaggttatcgggtttctattttgtgaattagattcttgtcttatcattttttctttcgaatggaacacaaactataggactgtgataggtgttgtgttgt |
4487197 |
T |
|
| Q |
418 |
gttg |
421 |
Q |
| |
|
|||| |
|
|
| T |
4487196 |
gttg |
4487193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 160; E-Value: 6e-85
Query Start/End: Original strand, 412 - 594
Target Start/End: Complemental strand, 4487176 - 4486993
Alignment:
| Q |
412 |
tgttgtgttggaggttttgcgggtttttgtgggtctgttggctgcgtttttacttgatg-gaagtgcagttttttctttgttgcgtgggggctgtcatag |
510 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4487176 |
tgttgtgttggaggttttgcgggtttttgtgggtctgctggctgcatttttacttgatgtgaagtgcagttttttctttgttgcgtgggggctgtcatag |
4487077 |
T |
|
| Q |
511 |
gtccagcaggttgttgggtgatcaataggcgaaattacagtggctgtattttgctttattttttgggtctttgctagttctgtg |
594 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4487076 |
gtccagcaggttgttgggtgatcaataggcgtaattacaatggctgtattttgctttattttttgggtctttgctagttctgtg |
4486993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 275; Significance: 1e-153; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 18 - 333
Target Start/End: Complemental strand, 19023186 - 19022871
Alignment:
| Q |
18 |
atacaaaaactggatttgttttggtgaattagttaagctggttttgaaccattgcatgtattaaaccagtctcaacttttggttttggttgtagtcaatt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19023186 |
atacaaaaactggatttgttttggtgaattagttaagctggttttgaaccattgcatgtattaaaccagtctcaacttttggttttggttgtagtcaatt |
19023087 |
T |
|
| Q |
118 |
tatgaatcttccattcaaaacttgtttttattttggtgttgtttgattacataatatgtatgttgagtattaattattgttacgtggcacaattgatctt |
217 |
Q |
| |
|
|||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19023086 |
tatgaatcttttattcaaaacttgttttgattttggtgttgtttgattacataatatatatgttgagtattaattattgttacgtggcacaattgatctt |
19022987 |
T |
|
| Q |
218 |
tatattgatataagagtagtagtgttgaattgatctagttatgtcctcnnnnnnncactttttgctagggggtatattttttgttgagaaaacataggcc |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19022986 |
tatattgatataagagtagtagtgttgaattgatctagttatgtcctcttttttccactttttgctagggggtatattttttgttgagaaaacataggcc |
19022887 |
T |
|
| Q |
318 |
gaggttatcgggtttc |
333 |
Q |
| |
|
||||||||| |||||| |
|
|
| T |
19022886 |
gaggttatcaggtttc |
19022871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 18 - 333
Target Start/End: Complemental strand, 22067085 - 22066770
Alignment:
| Q |
18 |
atacaaaaactggatttgttttggtgaattagttaagctggttttgaaccattgcatgtattaaaccagtctcaacttttggttttggttgtagtcaatt |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22067085 |
atacaaaaactggatttgttttggtgaattagttaagcttgttttgaaccattgcatgtattaaaccagtctcaacttttggttttggttgtagtcaatt |
22066986 |
T |
|
| Q |
118 |
tatgaatcttccattcaaaacttgtttttattttggtgttgtttgattacataatatgtatgttgagtattaattattgttacgtggcacaattgatctt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22066985 |
tatgaatcttccattcaaaacttgttttgattttggtgttgtttgattacataatatatatgttgagtattaattattgttacgtggcacaattgatctt |
22066886 |
T |
|
| Q |
218 |
tatattgatataagagtagtagtgttgaattgatctagttatgtcctcnnnnnnncactttttgctagggggtatattttttgttgagaaaacataggcc |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
22066885 |
tatattgatataagagtagtagtgttgaattgatctagttatgtcctcttttttctactttttgctagggggtatattatttgttgagaaaacataggcc |
22066786 |
T |
|
| Q |
318 |
gaggttatcgggtttc |
333 |
Q |
| |
|
||||||||| |||||| |
|
|
| T |
22066785 |
gaggttatcaggtttc |
22066770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 412 - 594
Target Start/End: Complemental strand, 19022601 - 19022423
Alignment:
| Q |
412 |
tgttgtgttggaggttttgcgggtttttgtgggtctgttggctgcgtttttacttgatg-gaagtgcagttttttctttgttgcgtgggggctgtcatag |
510 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| | |||||| |||||||||||||| ||||||| ||| |
|
|
| T |
19022601 |
tgttgtgttggaggttttgcgggtttttgtcggtctgcaggctgcgtttttacttgatgtgcagtgcaattttttctttgttgtgtgggggttgt----- |
19022507 |
T |
|
| Q |
511 |
gtccagcaggttgttgggtgatcaataggcgaaattacagtggctgtattttgctttattttttgggtctttgctagttctgtg |
594 |
Q |
| |
|
|||||||||||||| |||||||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
19022506 |
gtccagcaggttgtggggtgatcaataggcgtaattacggtggctgtattttgctttattttttgggtctgtgctacttctgtg |
19022423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 412 - 580
Target Start/End: Complemental strand, 22066483 - 22066319
Alignment:
| Q |
412 |
tgttgtgttggaggttttgcgggtttttgtgggtctgttggctgcgtttttacttgatg-gaagtgcagttttttctttgttgcgtgggggctgtcatag |
510 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||| | ||||||||||||||||||||||||||||||||| |
|
|
| T |
22066483 |
tgttgtgttggagattttgcgggtttttgtgggtctgcaggctgcgtttttacaatatgtgcagtgcagttttttctttgttgcgtgggggctgt----- |
22066389 |
T |
|
| Q |
511 |
gtccagcaggttgttgggtgatcaataggcgaaattacagtggctgtattttgctttattttttgggtct |
580 |
Q |
| |
|
|||||||||||||| |||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
22066388 |
gtccagcaggttgtggggtgatcaataggcgtaattacggtggctgtattttgctttattttttgggtct |
22066319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 331 - 421
Target Start/End: Complemental strand, 22066590 - 22066500
Alignment:
| Q |
331 |
ttctgttttgtgaattagattcttgtcttatcattttttctttcgaatggaacacaaactataggactgtgataggtgttgtgttgtgttg |
421 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
22066590 |
ttctgttttgtgaattagattcttgtcttatcattttttctttcgaatggaacacaaactagaggactgtgataggtgttgtgttgtgttg |
22066500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 331 - 421
Target Start/End: Complemental strand, 19022714 - 19022623
Alignment:
| Q |
331 |
ttctgttttgtgaattagattcttgtcttatcatttttt-ctttcgaatggaacacaaactataggactgtgataggtgttgtgttgtgttg |
421 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
19022714 |
ttctgttttgtgaattagattcttgtcttatcatttttttctttcgaatggaacacaaactagaggactgtgataggtgttgtgttgtgttg |
19022623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 147; Significance: 3e-77; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 142 - 333
Target Start/End: Complemental strand, 22619889 - 22619698
Alignment:
| Q |
142 |
tttttattttggtgttgtttgattacataatatgtatgttgagtattaattattgttacgtggcacaattgatctttatattgatataagagtagtagtg |
241 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22619889 |
ttttgattttggtgttgtttgattacataatatatatgttgagtattaattattgttacgtggcacaattgatctttatattgatataagagtagtagtg |
22619790 |
T |
|
| Q |
242 |
ttgaattgatctagttatgtcctcnnnnnnncactttttgctagggggtatattttttgttgagaaaacataggccgaggttatcgggtttc |
333 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| | |||||||||||||||||||||||||||| | ||||||||||||||||| |
|
|
| T |
22619789 |
ttgaattgatctagttatgtcctcttttttccactttttgccaaggggtatattttttgttgagaaaacataagtcgaggttatcgggtttc |
22619698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 18 - 150
Target Start/End: Complemental strand, 22621388 - 22621256
Alignment:
| Q |
18 |
atacaaaaactggatttgttttggtgaattagttaagctggttttgaaccattgcatgtattaaaccagtctcaacttttggttttggttgtagtcaatt |
117 |
Q |
| |
|
||||||||||||||||| |||| ||| |||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
22621388 |
atacaaaaactggatttctttttgtgtattagttaagttggttttgaaccattgcatgtattgaaccagtctcaacttttggttttggttgtagtcaatg |
22621289 |
T |
|
| Q |
118 |
tatgaatcttccattcaaaacttgtttttattt |
150 |
Q |
| |
|
||||||||||||||| |||||||||||| |||| |
|
|
| T |
22621288 |
tatgaatcttccattaaaaacttgttttgattt |
22621256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 126; Significance: 1e-64; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 414 - 594
Target Start/End: Complemental strand, 10316831 - 10316650
Alignment:
| Q |
414 |
ttgtgttggaggttttgcgggtttttgtgggtctgttggctgcgtttttacttgatg-gaagtgcagttttttctttgttgcgtgggggctgtcataggt |
512 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| | | ||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
10316831 |
ttgtgttggaggttttgcgggtttttgtgggtctgtaggctgtgtttttacttgatgtgcaatgcagttttttctttgttgcgtgagggctgtcataggt |
10316732 |
T |
|
| Q |
513 |
ccagcaggttgttgggtgatcaataggcgaaattacagtggctgtattttgctttattttttgggtctttgctagttctgtg |
594 |
Q |
| |
|
|||||||||||| |||||||||||||||| |||||| ||||||||| |||| |||||||||||||||| ||||| ||||||| |
|
|
| T |
10316731 |
ccagcaggttgtggggtgatcaataggcgtaattacggtggctgtagtttgatttattttttgggtctatgctacttctgtg |
10316650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0131 (Bit Score: 90; Significance: 3e-43; HSPs: 1)
Name: scaffold0131
Description:
Target: scaffold0131; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 331 - 554
Target Start/End: Original strand, 13514 - 13759
Alignment:
| Q |
331 |
ttctgttttgtgaattagattcttgtcttatcattttttctttcgaatggaacacaaactataggactgtgataggtgttgtgttgtgttg--------- |
421 |
Q |
| |
|
|||||||||||||| ||||||| ||||||||| |||||||||| ||||||||||||||||| ||||||| | ||||||||||||||||||| |
|
|
| T |
13514 |
ttctgttttgtgaaatagattcctgtcttatctttttttcttttgaatggaacacaaactagaggactgcgttaggtgttgtgttgtgttgtggctgctg |
13613 |
T |
|
| Q |
422 |
------------gaggttttgcgggtttttgtgggtctgttggctgcgtttttacttgatg-gaagtgcagttttttctttgttgcgtgggggctgtcat |
508 |
Q |
| |
|
||||||| ||||||||||||||||||| | ||||||||||| ||||||| | || || ||||||||| |||||||||||||||||||| |
|
|
| T |
13614 |
cctgttgtgtttgaggtttcgcgggtttttgtgggtctgctagctgcgtttttccttgatgtgcagcgcggttttttctatgttgcgtgggggctgtcat |
13713 |
T |
|
| Q |
509 |
aggtccagcaggttgttgggtgatcaataggcgaaattacagtggc |
554 |
Q |
| |
|
|||||||||||||||| | ||||||||||||| |||||| ||||| |
|
|
| T |
13714 |
aggtccagcaggttgtggagtgatcaataggcataattacggtggc |
13759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000004; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 179 - 248
Target Start/End: Original strand, 32091515 - 32091584
Alignment:
| Q |
179 |
gttgagtattaattattgttacgtggcacaattgatctttatattgatataagagtagtagtgttgaatt |
248 |
Q |
| |
|
|||||||||||||| | || |||||||| ||||||| |||||||||||||||||||||||| |||||| |
|
|
| T |
32091515 |
gttgagtattaattttctctatgtggcacagttgatctatatattgatataagagtagtagtgctgaatt |
32091584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 334 - 398
Target Start/End: Original strand, 32091979 - 32092045
Alignment:
| Q |
334 |
tgttttgtgaattagattcttgtcttatcattttt--tctttcgaatggaacacaaactataggact |
398 |
Q |
| |
|
||||||||||||||||||| | |||| | || ||| |||||| ||||||||||||||||||||||| |
|
|
| T |
32091979 |
tgttttgtgaattagattcctatcttttaatctttgttctttctaatggaacacaaactataggact |
32092045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 331 - 401
Target Start/End: Complemental strand, 12287209 - 12287137
Alignment:
| Q |
331 |
ttctgttttgtgaattagattcttgtcttatcattttt--tctttcgaatggaacacaaactataggactgtg |
401 |
Q |
| |
|
|||| ||||||||||||||||| | |||| | || ||| |||||| |||||||||||||||| ||||||||| |
|
|
| T |
12287209 |
ttctcttttgtgaattagattcctatcttttaatctttgttctttctaatggaacacaaactacaggactgtg |
12287137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 55 - 154
Target Start/End: Complemental strand, 43254951 - 43254850
Alignment:
| Q |
55 |
ctggttttgaaccattgcatgtattaaaccagtctcaacttttggttttggttgtagtcaatttatga---atcttccattcaaaacttgtttttatttt |
151 |
Q |
| |
|
|||||||||| | | || |||||| |||||||||||| ||| |||||||||| ||||||| ||||| |||||| |||||||||||||||| ||||| |
|
|
| T |
43254951 |
ctggttttgagctagtgtatgtatagaaccagtctcaaattt-ggttttggtttaagtcaatatatgatgaatcttcgattcaaaacttgttttgatttt |
43254853 |
T |
|
| Q |
152 |
ggt |
154 |
Q |
| |
|
||| |
|
|
| T |
43254852 |
ggt |
43254850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 331 - 401
Target Start/End: Complemental strand, 9391978 - 9391906
Alignment:
| Q |
331 |
ttctgttttgtgaattagattcttgtcttatcattttt--tctttcgaatggaacacaaactataggactgtg |
401 |
Q |
| |
|
|||||||||||||||||||||| | | || | |||||| |||||| |||||||||||||||| | ||||||| |
|
|
| T |
9391978 |
ttctgttttgtgaattagattcctattttttaatttttgttctttctaatggaacacaaactacaagactgtg |
9391906 |
T |
|
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