View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4911_low_3 (Length: 498)
Name: NF4911_low_3
Description: NF4911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4911_low_3 |
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| [»] scaffold0147 (1 HSPs) |
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Alignment Details
Target: scaffold0147 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: scaffold0147
Description:
Target: scaffold0147; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 57 - 482
Target Start/End: Original strand, 13945 - 14352
Alignment:
| Q |
57 |
caatgtttataattaaaagtaaaaataagaaatgaatacaaagaatgaaaacaaagatcaaacaagggatcaagattatggtcactgtcatggtggtggt |
156 |
Q |
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| T |
13945 |
caatgtttataattaaaagtaaaaataagaaatgaatacaaagaatgaaaacaaagatcaaacaagggatcaagattctggtcactgtcatggtggtggt |
14044 |
T |
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| Q |
157 |
tactcagatgaacatatttaaagaaaagtttacaagtttgatgattttgatatttagagttctagattttgacaatgtgctgtcaaaaggcattgattaa |
256 |
Q |
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| T |
14045 |
tactcagatgaacatatttaaagaaaagtttacaagtttgatgattttgatatttagagttctagattttgacaatgtgctgtcaaaaggcattgat--- |
14141 |
T |
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| Q |
257 |
cagactaatttctagattacaacaatttgcacttcgtctgcttcactcgttacgctttcagatccactcgctctgctgcgctacattcgagcgtctgttt |
356 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14142 |
---------------attacaacaatttgcacttcgtctgcttcactcgttacgctttcagatccactcgctctgctgcgctacattcgagcgtctgttt |
14226 |
T |
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| Q |
357 |
acttatcaacgaatatatgtcacttattaacatagttgccaactgttaatttgtaggtgtaactttttggtactacaaaatcaattttaaacgatctcaa |
456 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14227 |
acttatcaacgaatatatgtcacttattaacatagttgccaactgttaatttgtaggtgtaactttttggtactacaaaatcaattttaaacgatctcaa |
14326 |
T |
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| Q |
457 |
ccgttaatttgtgtgacgcaattact |
482 |
Q |
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|||||||||||||||||||||||||| |
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| T |
14327 |
ccgttaatttgtgtgacgcaattact |
14352 |
T |
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