View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4911_low_6 (Length: 320)
Name: NF4911_low_6
Description: NF4911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4911_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 148; Significance: 4e-78; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 83 - 242
Target Start/End: Original strand, 33990902 - 33991061
Alignment:
| Q |
83 |
cttgtgtgtagagcagcttaaagcggtattcatgctggctgattgtagatagttagtttgtccttagagaatattatgtttaggagcagttcattatttt |
182 |
Q |
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| T |
33990902 |
cttgtgtgtagagcagcttaaagcggtattcatgctcgctgattgtagatagttagtttgtccttagagaatattatgtttaggagccgttcattatttt |
33991001 |
T |
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| Q |
183 |
ccaaattacatcataggaaaacattgtaggcatcttctattctctgcaaatgttcattta |
242 |
Q |
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| T |
33991002 |
ccaaattacatcataggaaaacattgtaggcatcttctattctctgcaaatgttgattta |
33991061 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 87 - 242
Target Start/End: Original strand, 33973991 - 33974142
Alignment:
| Q |
87 |
tgtgtagagcagcttaaagcggtattcatgctggctgattgtagatagttagtttgtccttagagaatattatgtttaggagcagttcattattttccaa |
186 |
Q |
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| T |
33973991 |
tgtgtagagcagcttaaagcggtattcatgctcgctgattgtagatagt----ttgtccttagagaatattatgtttaggagcagttcattattttccaa |
33974086 |
T |
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| Q |
187 |
attacatcataggaaaacattgtaggcatcttctattctctgcaaatgttcattta |
242 |
Q |
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| T |
33974087 |
attacatcataggaaaacattgtaggcatcttctatcctctgcaaatgttgattta |
33974142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 87 - 213
Target Start/End: Original strand, 33951396 - 33951518
Alignment:
| Q |
87 |
tgtgtagagcagcttaaagcggtattcatgctggctgattgtagatagttagtttgtccttagagaatattatgtttaggagcagttcattattttccaa |
186 |
Q |
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| T |
33951396 |
tgtgtagagcagcttaaagctgtattcattctcattgattgcaga----tagtttgtccttagagaatattatgtttaggagcggttcattattttccaa |
33951491 |
T |
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| Q |
187 |
attacatcataggaaaacattgtaggc |
213 |
Q |
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| T |
33951492 |
attacatcataggaaaacattgtaggc |
33951518 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 233 - 307
Target Start/End: Original strand, 33951600 - 33951671
Alignment:
| Q |
233 |
tgttcatttagttgagcatgttaaattaatgtaaaagacatcaac-ccttttgtcttacaatctgtctttgttttt |
307 |
Q |
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| T |
33951600 |
tgttcatttagttgagcatgtta----aatgtaaaagacattaacttcttttgtcttacaatctgtctttggtttt |
33951671 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 307
Target Start/End: Original strand, 33974201 - 33974272
Alignment:
| Q |
233 |
tgttcatttagttgagcatgttaaattaatgtaaaagacatcaaccctttt-gtcttacaatctgtctttgttttt |
307 |
Q |
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| T |
33974201 |
tgttcatttagttgagcatattaaat----gtaaaagacattaactttttttgtcttacaatctgtctttggtttt |
33974272 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 307
Target Start/End: Original strand, 33991120 - 33991191
Alignment:
| Q |
233 |
tgttcatttagttgagcatgttaaattaatgtaaaagacatcaac-ccttttgtcttacaatctgtctttgttttt |
307 |
Q |
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| T |
33991120 |
tgttcatttagttgagcatgtta----aatgtaaaagagattaactatttttgtcttacaatctgtctttggtttt |
33991191 |
T |
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