View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4911_low_8 (Length: 270)
Name: NF4911_low_8
Description: NF4911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4911_low_8 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 5 - 254
Target Start/End: Original strand, 31776904 - 31777171
Alignment:
| Q |
5 |
tgcaatgtcgtgacaatcaaagttgataagatatcaacaagtaatatagcnnnnnnnnccaattgcacatgggataggt------------------tcc |
86 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| | ||| |
|
|
| T |
31776904 |
tgcaatgtcgtgacaatcaaagttgataagataccaacaagtaatatagcaaaaaaaaccaattgcacatgggatagttagcatatggagatgagattcc |
31777003 |
T |
|
| Q |
87 |
attacttaggtaacaagtaagtaaagggaatttgaaattggaacactacagaagtgaagaaggagtagctagaatttcgacttaaggaatatccattcaa |
186 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31777004 |
attacttaggtaacaagtaagtaaagggaatttgaaattggaacactacagaagtgaagaaggagtagctagaatttcgacttaaggaatatccattcaa |
31777103 |
T |
|
| Q |
187 |
gtgtttaaaaaattaagaagtctcatggttgttgagtctttgtctagcatgaattaatgtgtgttatg |
254 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31777104 |
gtgtttaaaaaattaagaagtctcatggttgttgagtctttgtctagcatgaattaatgtgtgttatg |
31777171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University