View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4912-Insertion-1 (Length: 1175)
Name: NF4912-Insertion-1
Description: NF4912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4912-Insertion-1 |
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Alignment Details
Target: chr4 (Bit Score: 930; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 930; E-Value: 0
Query Start/End: Original strand, 8 - 1031
Target Start/End: Original strand, 47725579 - 47726604
Alignment:
| Q |
8 |
tttgctggcctattcatctcaaaatgctttcttacacgtctaacatttgaatacaacaccctatactttgtttctgtaatattttgtaaaatagtcttaa |
107 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47725579 |
tttgctggcctattcatctcaaaatgctttcttacacgtctaacatttgaatacaacaccctatactttgtttctgtaatattttgtaaaatagtcttaa |
47725678 |
T |
|
| Q |
108 |
tttctggtattctatcaactgcaatttccatggagaattgactccaattaagcacatcactaaaaggcaaagagtaattgtcacaaattatcactggtac |
207 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
47725679 |
tttctggtattctatcaactgcaatttccatggagaattgactccaattaagcacatcactaaaaggcaaagagtaattgtcacaaattatcactgggac |
47725778 |
T |
|
| Q |
208 |
acaacctgcataaattgcttccaccactcttggacttgccacttcatgtccactagggcacaaacaaaacttgcttagacccatcaactttgtataatct |
307 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47725779 |
acatcctgcataaattgcttccaccactcttggacttgccacttcatgtccactagggcacaaacaaaacttgcttagacccatcaactttgtataatct |
47725878 |
T |
|
| Q |
308 |
tgaccttttggaaggtactcatgaacttgaacttcttcatccttgtccttccaactcttgagcaannnnnnnctaatcttaccatgggcaccaccagcnn |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
47725879 |
tgaccttttggaaggtactcatgaacttgaacttcttcatccttgtccttccaactcttgagcaatttttttctaatcttaccatgggcaccaccagcaa |
47725978 |
T |
|
| Q |
408 |
nnnnngttaagattgttcggttattagggtgttggcctgtattaggtgggccaagctttccaacaggcaaattcaattgagggatggacacatctctgtt |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
47725979 |
aaaaagttaagattgttcggttattagggtgttggtctgtattaggtgggccaagctttccaacaggcaaattcaattgagggatggacacatctctgtt |
47726078 |
T |
|
| Q |
508 |
aggccaaaatccttctgaagtgttggcattgcagagtgctctgatgaagtgcttgaagagtttaggattagcatatgaaactcttggtccctgaatcatt |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
47726079 |
aggccaaaatccttctgaagtgttggcattgcagagtgctctgatgaagtgcttgaagagtttaggattagcatatgaaactcttggtccctgaatcatt |
47726178 |
T |
|
| Q |
608 |
aagtaaagggtatttttcttgtaacatcatcacatagactacttaaattcaaaaatggtgaaattgtgaacctacccaatcatggcatgaaagcataaaa |
707 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
47726179 |
aagtaaagggtatttttcttgtaacatcatcacatagactacttaaattcaaaaatggtgaaattgtgaacctacccaatcatggcatgaaagcagaaaa |
47726278 |
T |
|
| Q |
708 |
tggtcagcaccttgacttctgttccaataaggatacttgttggcaacaatgttgatataatcctcaactaaaagctgtaagcgatgaggattataatctg |
807 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
47726279 |
tggtcagcaccttgacttatgttccaataaggatacttgttggcaacaattttgatataatcctcaactaaaagctgtaagcgatgaggattataatctg |
47726378 |
T |
|
| Q |
808 |
atcttgactttctaggcttgtaaacatagcgaatgaccttagaaacgctgaaaggaagaaagaaaacatgggccagttcaggatgagtagccttgaatgg |
907 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
47726379 |
atcttgactttctaggcttgtaaacatagcgaatgaccttagacacgctgaaaggaagaaagaaaacatgggccagttcaggatgagtagccttgaatgg |
47726478 |
T |
|
| Q |
908 |
actcttgttacttgtgtccatttcatcaatgaattgtccttcaatggaatatttgttgtttacaggtccatcatgcaccaatggttg-tctccttc--tg |
1004 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |
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|
| T |
47726479 |
actcttgttacttgtgtccatttcatcaatgaattgtccttcaatggaatatttgttgtttacaggtccatcatgcaccaatggttgctctccttccttg |
47726578 |
T |
|
| Q |
1005 |
taatacccataccttgaatctcttcac |
1031 |
Q |
| |
|
| ||||||||||||||||||||||||| |
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|
| T |
47726579 |
t-atacccataccttgaatctcttcac |
47726604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 84; E-Value: 3e-39
Query Start/End: Original strand, 82 - 361
Target Start/End: Original strand, 47727825 - 47728104
Alignment:
| Q |
82 |
tgtaatattttgtaaaatagtcttaatttctggtattctatcaactgcaatttccatggagaattgactccaattaagcacatcactaaaaggcaaagag |
181 |
Q |
| |
|
||||| ||||||||| ||| ||||||| ||| |||| | || |||| |||||| | || |||| ||||||||| | ||||||| | |||||||| || |
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|
| T |
47727825 |
tgtaacattttgtaatatattcttaatctctactattttctccactggaatttcaactgaaaattcactccaattcaacacatcattgaaaggcaaggaa |
47727924 |
T |
|
| Q |
182 |
taattgtcacaaattatcactggtacacaacctgcataaattgcttccaccactcttggacttgccacttcatgtccactagggcacaaacaaaacttgc |
281 |
Q |
| |
|
||||| | | |||| ||||| |||||||| || |||| |||||||||||| | ||||||||| |||||||||| |||||| || ||||||||||| || | |
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|
| T |
47727925 |
taattctgagaaataatcacaggtacacacccagcattaattgcttccacaattcttggactagccacttcatatccacttggacacaaacaaaatttac |
47728024 |
T |
|
| Q |
282 |
ttagacccatcaactttgtataatcttgaccttttggaaggtactcatgaacttgaacttcttcatccttgtccttccaa |
361 |
Q |
| |
|
|||| ||||| || | |||||| | |||||| |||||||| ||||||||||||||||||| | |||| |||| ||||||| |
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|
| T |
47728025 |
ttagtcccattaattctgtatagttttgaccctttggaagatactcatgaacttgaacttgtgcatctttgttcttccaa |
47728104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 922 - 1031
Target Start/End: Original strand, 47729070 - 47729181
Alignment:
| Q |
922 |
tgtccatttcatcaatgaattgtccttcaatggaatatttgttgtttacaggtccatcatgcaccaatggttg-tctccttc-tgtaatacccatacctt |
1019 |
Q |
| |
|
|||| ||||||||||||||||| |||||||| | |||| ||||||| || ||||||||||| || | |||||| |||||||| || ||||||| | ||| |
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|
| T |
47729070 |
tgtctatttcatcaatgaattgaccttcaattgcatatatgttgttcactggtccatcatgtactattggttgctctccttcttggtatacccaaatctt |
47729169 |
T |
|
| Q |
1020 |
gaatctcttcac |
1031 |
Q |
| |
|
||||||||||| |
|
|
| T |
47729170 |
caatctcttcac |
47729181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 73; Significance: 9e-33; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 73; E-Value: 9e-33
Query Start/End: Original strand, 704 - 878
Target Start/End: Complemental strand, 26955734 - 26955568
Alignment:
| Q |
704 |
aaaatggtcagcaccttgacttctgttccaataaggatacttgttggcaacaatgttgatataatcctcaactaaaagctgtaagcgatgaggattataa |
803 |
Q |
| |
|
||||||| ||||| |||| |||||||||||||||||||||||||| ||| ||| || ||||| |||||||||||| ||| | ||||||| |||| |
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|
| T |
26955734 |
aaaatggccagcatcttggcttctgttccaataaggatacttgtttgcagcaa-gt-------atcctaaactaaaagctgcaagtggtgaggatcataa |
26955643 |
T |
|
| Q |
804 |
tctgatcttgactttctaggcttgtaaacatagcgaatgaccttagaaacgctgaaaggaagaaagaaaacatgg |
878 |
Q |
| |
|
|||||||| || ||||||| |||||||||||||||||||||||||| || |||||| ||||||||||||||||| |
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|
| T |
26955642 |
tctgatctggatcttctaggtttgtaaacatagcgaatgaccttagacacactgaaacgaagaaagaaaacatgg |
26955568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 3e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 679 - 747
Target Start/End: Original strand, 263534 - 263602
Alignment:
| Q |
679 |
ctacccaatcatggcatgaaagcataaaatggtcagcaccttgacttctgttccaataaggatacttgt |
747 |
Q |
| |
|
|||||||||||||||||||||| | |||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
263534 |
ctacccaatcatggcatgaaagtagaaaatggtcagcaccttggcttctgttccaataaggatacttgt |
263602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000007; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 199 - 283
Target Start/End: Complemental strand, 41757677 - 41757593
Alignment:
| Q |
199 |
cactggtacacaacctgcataaattgcttccaccactcttggacttgccacttcatgtccactagggcacaaacaaaacttgctt |
283 |
Q |
| |
|
|||||| |||||||||| || |||||||||||||||||||||||||| || || | |||||||| || | ||| ||||||||| |
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|
| T |
41757677 |
cactggaacacaacctgtgtatattgcttccaccactcttggacttgcaacctcgtacccactaggacaaagacagaacttgctt |
41757593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 199 - 283
Target Start/End: Complemental strand, 41765760 - 41765676
Alignment:
| Q |
199 |
cactggtacacaacctgcataaattgcttccaccactcttggacttgccacttcatgtccactagggcacaaacaaaacttgctt |
283 |
Q |
| |
|
|||||| |||||||||| || |||||||||||||||||||||||||| || || |||||||| || | ||||||||||||| |
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|
| T |
41765760 |
cactggaacacaacctgtgtatattgcttccaccactcttggacttgcaacctcccacccactaggacaaagacaaaacttgctt |
41765676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000003; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 680 - 747
Target Start/End: Original strand, 36515067 - 36515134
Alignment:
| Q |
680 |
tacccaatcatggcatgaaagcataaaatggtcagcaccttgacttctgttccaataaggatacttgt |
747 |
Q |
| |
|
|||||||||||| || |||||||| ||||||||||| || | |||||| |||||||||| ||| |||| |
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|
| T |
36515067 |
tacccaatcatgacaagaaagcatgaaatggtcagctccataacttctattccaataagcatatttgt |
36515134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 282
Target Start/End: Complemental strand, 44629227 - 44629169
Alignment:
| Q |
224 |
gcttccaccactcttggacttgccacttcatgtccactagggcacaaacaaaacttgct |
282 |
Q |
| |
|
|||||||| | |||||||||||| ||||||| ||||| || ||||||||||||||||| |
|
|
| T |
44629227 |
gcttccactattcttggacttgctacttcataaccacttggacacaaacaaaacttgct |
44629169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 680 - 733
Target Start/End: Complemental strand, 49301630 - 49301577
Alignment:
| Q |
680 |
tacccaatcatggcatgaaagcataaaatggtcagcaccttgacttctgttcca |
733 |
Q |
| |
|
||||||||||||||| | |||||| || ||||||||||| ||| |||||||||| |
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|
| T |
49301630 |
tacccaatcatggcaagcaagcatgaagtggtcagcaccatgagttctgttcca |
49301577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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