View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4912-Insertion-2 (Length: 516)

Name: NF4912-Insertion-2
Description: NF4912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4912-Insertion-2
NF4912-Insertion-2
[»] chr4 (16 HSPs)
chr4 (249-487)||(41969240-41969479)
chr4 (8-156)||(41962821-41962969)
chr4 (296-478)||(41969118-41969302)
chr4 (249-472)||(29905821-29906045)
chr4 (321-472)||(16469612-16469762)
chr4 (249-380)||(41969409-41969540)
chr4 (315-396)||(44098855-44098936)
chr4 (326-394)||(12232002-12232070)
chr4 (314-390)||(13523331-13523407)
chr4 (249-394)||(29905728-29905876)
chr4 (323-471)||(35425519-35425670)
chr4 (320-404)||(42562634-42562719)
chr4 (321-404)||(13505252-13505336)
chr4 (410-478)||(29905984-29906052)
chr4 (320-381)||(38650077-38650139)
chr4 (320-396)||(39463555-39463631)
[»] chr5 (11 HSPs)
chr5 (249-483)||(1817727-1817961)
chr5 (315-483)||(11478851-11479019)
chr5 (249-374)||(1817895-1818020)
chr5 (315-404)||(27348071-27348160)
chr5 (262-374)||(11478966-11479078)
chr5 (321-386)||(24211047-24211112)
chr5 (249-374)||(36574314-36574439)
chr5 (410-482)||(1817720-1817792)
chr5 (323-381)||(13272257-13272315)
chr5 (434-483)||(36574331-36574380)
chr5 (306-374)||(23218121-23218189)
[»] chr3 (20 HSPs)
chr3 (249-487)||(48085922-48086157)
chr3 (321-472)||(25157637-25157790)
chr3 (321-465)||(16256186-16256331)
chr3 (338-472)||(16292735-16292870)
chr3 (346-483)||(30228988-30229123)
chr3 (249-369)||(25239800-25239920)
chr3 (410-482)||(48085915-48085987)
chr3 (336-468)||(13330377-13330510)
chr3 (426-487)||(27663375-27663436)
chr3 (262-374)||(30229072-30229182)
chr3 (249-374)||(48086087-48086212)
chr3 (321-396)||(2811271-2811346)
chr3 (274-335)||(27663391-27663452)
chr3 (337-467)||(47829719-47829851)
chr3 (330-387)||(23526952-23527009)
chr3 (330-387)||(23527015-23527072)
chr3 (321-404)||(7627313-7627397)
chr3 (321-381)||(19195980-19196040)
chr3 (320-381)||(34440147-34440208)
chr3 (320-396)||(53347705-53347781)
[»] chr2 (10 HSPs)
chr2 (249-417)||(31627155-31627324)
chr2 (315-396)||(5308082-5308163)
chr2 (316-472)||(27756948-27757104)
chr2 (410-487)||(31627254-31627331)
chr2 (321-467)||(11807619-11807766)
chr2 (321-468)||(37939623-37939771)
chr2 (336-396)||(20931236-20931296)
chr2 (321-404)||(31118953-31119037)
chr2 (321-390)||(15424146-15424215)
chr2 (323-396)||(27333209-27333282)
[»] chr7 (16 HSPs)
chr7 (315-472)||(2413126-2413283)
chr7 (321-439)||(31010982-31011101)
chr7 (327-472)||(5241554-5241700)
chr7 (321-393)||(16728493-16728565)
chr7 (321-393)||(17705565-17705637)
chr7 (321-468)||(13608898-13609046)
chr7 (321-468)||(22518006-22518154)
chr7 (314-390)||(9652306-9652382)
chr7 (321-467)||(39561477-39561624)
chr7 (336-468)||(24576305-24576438)
chr7 (285-374)||(31011102-31011191)
chr7 (321-404)||(15826101-15826185)
chr7 (321-393)||(17715581-17715653)
chr7 (347-463)||(12345985-12346102)
chr7 (321-381)||(21065762-21065822)
chr7 (320-394)||(6715708-6715782)
[»] chr8 (14 HSPs)
chr8 (249-396)||(6798575-6798722)
chr8 (249-417)||(16003274-16003443)
chr8 (321-471)||(28838259-28838410)
chr8 (321-468)||(9238590-9238737)
chr8 (325-467)||(26489164-26489307)
chr8 (410-487)||(16003373-16003450)
chr8 (321-394)||(16995834-16995907)
chr8 (410-486)||(6798568-6798644)
chr8 (320-407)||(14095098-14095186)
chr8 (325-409)||(38187614-38187702)
chr8 (321-396)||(22721615-22721690)
chr8 (429-471)||(6298129-6298171)
chr8 (426-472)||(29371493-29371539)
chr8 (320-396)||(37229756-37229832)
[»] chr6 (2 HSPs)
chr6 (321-468)||(17754922-17755070)
chr6 (320-381)||(35012467-35012528)
[»] scaffold0408 (1 HSPs)
scaffold0408 (320-407)||(5440-5528)
[»] scaffold0003 (1 HSPs)
scaffold0003 (274-404)||(326148-326278)
[»] chr1 (8 HSPs)
chr1 (320-396)||(28540800-28540876)
chr1 (321-390)||(23348832-23348900)
chr1 (321-404)||(43784790-43784874)
chr1 (320-396)||(50907765-50907841)
chr1 (336-404)||(3377335-3377404)
chr1 (321-394)||(24965445-24965518)
chr1 (321-394)||(32646332-32646405)
chr1 (320-381)||(33298637-33298698)
[»] scaffold1212 (1 HSPs)
scaffold1212 (320-396)||(1235-1311)
[»] scaffold0010 (1 HSPs)
scaffold0010 (322-394)||(34212-34284)
[»] scaffold0046 (1 HSPs)
scaffold0046 (321-394)||(74766-74839)


Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 249 - 487
Target Start/End: Original strand, 41969240 - 41969479
Alignment:
Q  249 aaatcaattaatatttcattaagaaatttt-atcaaacacctagaattaaacataaacattatgagtacattatgtcatttcaatctctaaactacctca 347  Q
    |||||||||||||||||||| ||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  41969240 aaatcaattaatatttcattgagacatttttatcaaacacctagaattaaacataaacattattagtacattatgtcatttcaatctctaaactacctca 41969339  T
Q  348 ttgcactcaaacttactataatcaacactaacaatccaatttctaactatttcatcactaatatgcaaaatatcaattaattttttattgagacattttg 447  Q
    ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| |||||||||||||     
T  41969340 ttgcactcaaacttacactaatcaacactaacaatccaatttctaactatttcatcattaatatgcaaaaaatcaattaatttttcattgagacatttta 41969439  T
Q  448 tcaaacatctagagttcaacataaatattatgagtttatt 487  Q
    | ||||| ||||||||||||||||||||||||||||||||    
T  41969440 tgaaacagctagagttcaacataaatattatgagtttatt 41969479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 8 - 156
Target Start/End: Original strand, 41962821 - 41962969
Alignment:
Q  8 cattcaatgtcctctgcaacataacatacaaatatcgcttacatcaaaccaagttgtaccnnnnnnngcagaaactgctattgaaaaagacaatcttgtt 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||    
T  41962821 cattcaatgtcctctgcaacataacatacaaatatcgcttacatcaaaccaagttgtaccaaaaaaagcagaaactgctattgaaaaagacaatcttgtt 41962920  T
Q  108 cgtcatttgcatgcgccagtgacatagaaaattcatgagatctcctaat 156  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  41962921 cgtcatttgcatgcgccagtgacatagaaaattcatgagatctcctaat 41962969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 296 - 478
Target Start/End: Original strand, 41969118 - 41969302
Alignment:
Q  296 aaacataaacattatgagtacattatgtcatttcaatctctaaactacctcattgcactcaaacttactataatcaacactaacaatccaatttctaact 395  Q
    |||||||||||||||||||||| | |||||||||||||||||||||||  |||||  |||||||||||||||||||||| || |||||||||||||||||    
T  41969118 aaacataaacattatgagtacaatgtgtcatttcaatctctaaactacaacattgtgctcaaacttactataatcaacattatcaatccaatttctaact 41969217  T
Q  396 -atttcatcactaatatgcaaaatatcaattaattttttattgagaca-ttttgtcaaacatctagagttcaacataaatattat 478  Q
     | ||||||| ||| |||||||| |||||||||| ||| ||||||||| |||| ||||||| ||||| || |||||||| |||||    
T  41969218 aagttcatcattaacatgcaaaaaatcaattaatatttcattgagacatttttatcaaacacctagaattaaacataaacattat 41969302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 249 - 472
Target Start/End: Complemental strand, 29906045 - 29905821
Alignment:
Q  249 aaatcaattaatatttcattaagaaattttatcaaacacctagaattaaacataaacattatgagtacattatgtcatttcaatctctaaactacctcat 348  Q
    |||||||||||| ||| ||| ||| ||||||||||  | ||| | || ||| |||||||||| ||||| || ||| |||| ||| ||||||||||| |||    
T  29906045 aaatcaattaattttttattgagacattttatcaagtatctaaacttcaacgtaaacattataagtacgttgtgtaattttaatatctaaactaccacat 29905946  T
Q  349 tgcactcaaacttactataatcaacactaacaatccaatttctaacta-tttcatcactaatatgcaaaatatcaattaattttttattgagacattttg 447  Q
    ||||||||||  |||||||||||||  | |||||| |||||| || || |||||| | ||| |||||||| |||||||||||||| |||||||||||||     
T  29905945 tgcactcaaatctactataatcaacttttacaatcaaatttccaagtaatttcattattaacatgcaaaaaatcaattaatttttcattgagacatttta 29905846  T
Q  448 tcaaacatctagagttcaacataaa 472  Q
    |||||||| ||||||||||||||||    
T  29905845 tcaaacatatagagttcaacataaa 29905821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 321 - 472
Target Start/End: Complemental strand, 16469762 - 16469612
Alignment:
Q  321 tgtcatttcaatctctaaactacctcattgcactcaaacttactataatcaacactaacaatccaatttctaact-atttcatcactaatatgcaaaata 419  Q
    |||||||||||||||||| |||||  |||||||||||| | |||||||| |||| |||||||||||||||||||| || |||||| ||| |||| |||||    
T  16469762 tgtcatttcaatctctaa-ctaccagattgcactcaaaatcactataataaacattaacaatccaatttctaactaatgtcatcattaacatgc-aaata 16469665  T
Q  420 tcaattaattttttattgagacattttgtcaaacatctagagttcaacataaa 472  Q
    ||||   |||||| ||  ||||||||||||||||| |||||||||||||||||    
T  16469664 tcaaactatttttcatatagacattttgtcaaacacctagagttcaacataaa 16469612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 249 - 380
Target Start/End: Original strand, 41969409 - 41969540
Alignment:
Q  249 aaatcaattaatatttcattaagaaattttatcaaacacctagaattaaacataaacattatgagtacattatgtcatttcaatctctaaactacctcat 348  Q
    |||||||||||| ||||||| ||| ||||||| ||||| ||||| || |||||||| |||||||||  ||| ||||||||||||||||||||||||  ||    
T  41969409 aaatcaattaatttttcattgagacattttatgaaacagctagagttcaacataaatattatgagtttattgtgtcatttcaatctctaaactaccatat 41969508  T
Q  349 tgcactcaaacttactataatcaacactaaca 380  Q
    |||||  ||||||||| ||||||||| |||||    
T  41969509 tgcacataaacttactctaatcaacattaaca 41969540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 315 - 396
Target Start/End: Complemental strand, 44098936 - 44098855
Alignment:
Q  315 acattatgtcatttcaatctctaaactacctcattgcactcaaacttactataatcaacactaacaatccaatttctaacta 396  Q
    ||||| || ||||||||| |||||||||||  ||| |||||||||| ||||||||||||| ||||||| |||||||||||||    
T  44098936 acattgtgccatttcaatatctaaactaccaaattccactcaaactcactataatcaacattaacaattcaatttctaacta 44098855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 326 - 394
Target Start/End: Original strand, 12232002 - 12232070
Alignment:
Q  326 tttcaatctctaaactacctcattgcactcaaacttactataatcaacactaacaatccaatttctaac 394  Q
    ||||||||||||||||| | ||||||||||||||| | ||||||||||| ||||||| |||||||||||    
T  12232002 tttcaatctctaaactaacacattgcactcaaactcaatataatcaacattaacaattcaatttctaac 12232070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 314 - 390
Target Start/End: Original strand, 13523331 - 13523407
Alignment:
Q  314 tacattatgtcatttcaatctctaaactacctcattgcactcaaacttactataatcaacactaacaatccaatttc 390  Q
    |||||| |||||||||| ||||||| ||||| ||||||||||||||| ||||||||||| | ||||||| |||||||    
T  13523331 tacattgtgtcatttcattctctaagctaccacattgcactcaaactcactataatcaatattaacaattcaatttc 13523407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 249 - 394
Target Start/End: Complemental strand, 29905876 - 29905728
Alignment:
Q  249 aaatcaattaatatttcattaagaaattttatcaaacacctagaattaaacataaacattatga----gtacattatgtcatttcaatctctaaactacc 344  Q
    |||||||||||| ||||||| ||| |||||||||||||  |||| || ||||||||||| ||||     | |||||| |||||| ||| | |||||||||    
T  29905876 aaatcaattaatttttcattgagacattttatcaaacatatagagttcaacataaacatcatgaattcattcattatatcattttaat-tttaaactacc 29905778  T
Q  345 tcattgcactcaaacttactataatcaacactaacaatccaatttctaac 394  Q
     ||||||||| ||||||||| ||| ||||| ||||||| |||||| ||||    
T  29905777 acattgcactgaaacttactctaaccaacattaacaattcaatttataac 29905728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 323 - 471
Target Start/End: Original strand, 35425519 - 35425670
Alignment:
Q  323 tcatttcaatctctaaactacctcattgcactcaaacttactataatcaacactaacaatccaa--tttctaact-atttcatcactaa-tatgcaaaat 418  Q
    |||||||||||||||| |||||  ||||||||||| || |||||||||||||  |||||| |||  ||| ||||| |||||| || |||  ||||||||     
T  35425519 tcatttcaatctctaatctaccatattgcactcaatctcactataatcaacatgaacaattcaatttttttaactaatttcaccattaacaatgcaaaa- 35425617  T
Q  419 atcaattaattttttattgagacattttgtcaaacatctagagttcaacataa 471  Q
    | |||  |  |||||||||||||||||| ||||||| ||||||||||||||||    
T  35425618 aacaaacacatttttattgagacattttatcaaacacctagagttcaacataa 35425670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 320 - 404
Target Start/End: Original strand, 42562634 - 42562719
Alignment:
Q  320 atgtcatttcaatctctaaactacctcattgcactcaaacttactataatcaacactaacaatccaatttctaact-atttcatca 404  Q
    ||||||||||||||  ||||||||| |||||| ||||||| |||||||||||||| |||| | |||  |||||||| |||||||||    
T  42562634 atgtcatttcaatccgtaaactaccacattgctctcaaacatactataatcaacattaacgaaccatattctaactaatttcatca 42562719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 321 - 404
Target Start/End: Original strand, 13505252 - 13505336
Alignment:
Q  321 tgtcatttcaatctctaaactacctcattgcactcaaacttactataatcaacactaacaatccaatttctaact-atttcatca 404  Q
    |||||||||| ||  ||||||||| |||||||  |||||| ||||||||||||| |||| | ||||||||||||| |||||||||    
T  13505252 tgtcatttcagtccgtaaactaccacattgcagacaaactaactataatcaacaataacgaaccaatttctaactaatttcatca 13505336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 410 - 478
Target Start/End: Complemental strand, 29906052 - 29905984
Alignment:
Q  410 atgcaaaatatcaattaattttttattgagacattttgtcaaacatctagagttcaacataaatattat 478  Q
    |||||||| |||||||||||||||||||||||||||| ||||  ||||| | |||||| |||| |||||    
T  29906052 atgcaaaaaatcaattaattttttattgagacattttatcaagtatctaaacttcaacgtaaacattat 29905984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 320 - 381
Target Start/End: Complemental strand, 38650139 - 38650077
Alignment:
Q  320 atgtcatttcaatctctaaa-ctacctcattgcactcaaacttactataatcaacactaacaa 381  Q
    ||||||||||||||| |||| ||||| ||||||| ||||||| ||||||||||||| ||||||    
T  38650139 atgtcatttcaatctgtaaaactaccacattgcagtcaaactaactataatcaacattaacaa 38650077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 320 - 396
Target Start/End: Complemental strand, 39463631 - 39463555
Alignment:
Q  320 atgtcatttcaatctctaaactacctcattgcactcaaacttactataatcaacactaacaatccaatttctaacta 396  Q
    ||||||||||||||  ||||||||| ||||||| |||||| || ||||||||| | |||||| |||  |||||||||    
T  39463631 atgtcatttcaatccgtaaactaccacattgcagtcaaacatattataatcaatattaacaaaccatattctaacta 39463555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 124; Significance: 1e-63; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 249 - 483
Target Start/End: Original strand, 1817727 - 1817961
Alignment:
Q  249 aaatcaattaatatttcattaagaaattttatcaaacacctagaattaaacataaacattatgagtacattatgtcatttcaatctctaaactacctcat 348  Q
    |||||||  ||| ||||||||||| ||||||||||||| ||||| || ||||||||||||||||||||||| |||||||| ||||||||||||| | |||    
T  1817727 aaatcaaacaatttttcattaagacattttatcaaacatctagagttcaacataaacattatgagtacattgtgtcatttgaatctctaaactatcacat 1817826  T
Q  349 tgcactcaaacttactataatcaacactaacaatccaatttctaact-atttcatcactaatatgcaaaatatcaattaattttttattgagacattttg 447  Q
    |||||||||||| ||| ||||||||| |||||||||||||||||||| ||||||||| ||| |||||||| |||||  ||||||| ||||||| |||||     
T  1817827 tgcactcaaactcactctaatcaacattaacaatccaatttctaactaatttcatcattaacatgcaaaa-atcaaacaatttttcattgagatatttta 1817925  T
Q  448 tcaaacatctagagttcaacataaatattatgagtt 483  Q
    ||| ||| ||||||||||||||||| ||||||||||    
T  1817926 tcatacacctagagttcaacataaacattatgagtt 1817961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 315 - 483
Target Start/End: Original strand, 11478851 - 11479019
Alignment:
Q  315 acattatgtcatttcaatctctaaactacctcattgcactcaaacttactataatcaacactaacaatccaatttctaacta-tttcatcactaatatgc 413  Q
    |||||||||| ||||||| ||||||||| | ||||  ||||||||| | ||||||||| | |||||||||||||| |||||| |||||||| ||| ||||    
T  11478851 acattatgtcgtttcaatatctaaactatcacatta-actcaaactcattataatcaatattaacaatccaatttataactaatttcatcattaacatgc 11478949  T
Q  414 aaaatatcaattaattttttattgagacattttgtcaaacatctagagttcaacataaatattatgagtt 483  Q
    ||||||||||  ||||||| |||||||||||||   ||||| |||||||||||||| || ||||||||||    
T  11478950 aaaatatcaaacaatttttcattgagacattttactaaacacctagagttcaacattaacattatgagtt 11479019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 249 - 374
Target Start/End: Original strand, 1817895 - 1818020
Alignment:
Q  249 aaatcaattaatatttcattaagaaattttatcaaacacctagaattaaacataaacattatgagtacattatgtcatttcaatctctaaactacctcat 348  Q
    |||||||  ||| ||||||| ||| ||||||||| ||||||||| || |||||||||||||||||| |||| || ||||||||||||||||||||| |||    
T  1817895 aaatcaaacaatttttcattgagatattttatcatacacctagagttcaacataaacattatgagttcattgtgccatttcaatctctaaactaccacat 1817994  T
Q  349 tgcactcaaacttactataatcaaca 374  Q
    |  | | |||||||| ||||||||||    
T  1817995 ttgaatgaaacttacaataatcaaca 1818020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 315 - 404
Target Start/End: Original strand, 27348071 - 27348160
Alignment:
Q  315 acattatgtcatttcaatctctaaactacctcattgcactcaaacttactataatcaacactaacaatccaatttctaact-atttcatca 404  Q
    ||||| |||||||||||||||||| ||||| ||||||||||||||| ||||||||||||| ||||||| |||||||||||| |||||||||    
T  27348071 acattgtgtcatttcaatctctaa-ctaccacattgcactcaaactcactataatcaacattaacaattcaatttctaactaatttcatca 27348160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 262 - 374
Target Start/End: Original strand, 11478966 - 11479078
Alignment:
Q  262 tttcattaagaaattttatcaaacacctagaattaaacataaacattatgagtacattatgtcatttcaatctctaaactacctcattgcactcaaactt 361  Q
    ||||||| ||| ||||||  ||||||||||| || ||||| |||||||||||| |||| |||||||||||||| ||||||| | ||||  | ||||||||    
T  11478966 tttcattgagacattttactaaacacctagagttcaacattaacattatgagttcattgtgtcatttcaatctataaactatcacatttgagtcaaactt 11479065  T
Q  362 actataatcaaca 374  Q
    ||| |||||||||    
T  11479066 actctaatcaaca 11479078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 321 - 386
Target Start/End: Original strand, 24211047 - 24211112
Alignment:
Q  321 tgtcatttcaatctctaaactacctcattgcactcaaacttactataatcaacactaacaatccaa 386  Q
    |||||||||||||| ||||||||  ||||||| ||||||||||||||||||||| |||||||||||    
T  24211047 tgtcatttcaatctataaactactacattgcagtcaaacttactataatcaacattaacaatccaa 24211112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 249 - 374
Target Start/End: Original strand, 36574314 - 36574439
Alignment:
Q  249 aaatcaattaatatttcattaagaaattttatcaaacacctagaattaaacataaacattatgagtacattatgtcatttcaatctctaaactacctcat 348  Q
    |||||||| ||  ||||||| ||| || |||||||||| ||| | || ||||||||||||| |||| |||||||| |||| ||||||||||||||| |||    
T  36574314 aaatcaatcaaactttcattgagacatcttatcaaacatctatagttcaacataaacattacgagttcattatgtgattttaatctctaaactaccacat 36574413  T
Q  349 tgcactcaaacttactataatcaaca 374  Q
    |  | | ||||||||| |||||||||    
T  36574414 ttgagtgaaacttactttaatcaaca 36574439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 410 - 482
Target Start/End: Original strand, 1817720 - 1817792
Alignment:
Q  410 atgcaaaatatcaattaattttttattgagacattttgtcaaacatctagagttcaacataaatattatgagt 482  Q
    |||||||| |||||  ||||||| ||| ||||||||| ||||||||||||||||||||||||| |||||||||    
T  1817720 atgcaaaaaatcaaacaatttttcattaagacattttatcaaacatctagagttcaacataaacattatgagt 1817792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 323 - 381
Target Start/End: Complemental strand, 13272315 - 13272257
Alignment:
Q  323 tcatttcaatctctaaactacctcattgcactcaaacttactataatcaacactaacaa 381  Q
    |||||||||||  ||||||||| |||||||||||||| || ||||||||| | ||||||    
T  13272315 tcatttcaatccgtaaactaccacattgcactcaaacatattataatcaaaattaacaa 13272257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 434 - 483
Target Start/End: Original strand, 36574331 - 36574380
Alignment:
Q  434 attgagacattttgtcaaacatctagagttcaacataaatattatgagtt 483  Q
    |||||||||| || ||||||||||| ||||||||||||| |||| |||||    
T  36574331 attgagacatcttatcaaacatctatagttcaacataaacattacgagtt 36574380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 306 - 374
Target Start/End: Original strand, 23218121 - 23218189
Alignment:
Q  306 attatgagtacattatgtcatttcaatctctaaactacctcattgcactcaaacttactataatcaaca 374  Q
    ||||||||| |||| ||| ||||||||||||||||||||  | || | | ||||||||| |||||||||    
T  23218121 attatgagttcattgtgttatttcaatctctaaactaccatactggagtgaaacttactctaatcaaca 23218189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 98; Significance: 5e-48; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 249 - 487
Target Start/End: Original strand, 48085922 - 48086157
Alignment:
Q  249 aaatcaattaatatttcattaagaaattttatcaaacacctagaattaaacataaacattatgagtacattatgtcatttcaatctctaaactacctcat 348  Q
    |||||||||||| ||||||| ||| ||||||||||||||||||| || |||||||| |||| ||||||||| ||||||||||||||||||| |||| |||    
T  48085922 aaatcaattaatttttcattgagacattttatcaaacacctagagttcaacataaaaattacgagtacattgtgtcatttcaatctctaaattaccacat 48086021  T
Q  349 tgcactcaaacttactataatcaacactaacaatccaatttctaacta-tttcatcactaatatgcaaaatatcaattaattttttattgagacattttg 447  Q
    |||  ||||||| | | ||||||||| |   |||||||||| |||||| |||||||| ||| ||| |||| |||||| |||||||  || ||||||||      
T  48086022 tgctgtcaaactcaatgtaatcaacatt---aatccaatttataactagtttcatcattaacatg-aaaaaatcaataaatttttcgtttagacatttaa 48086117  T
Q  448 tcaaacatctagagttcaacataaatattatgagtttatt 487  Q
     |||||| ||||||||||||||||||||||||||||||||    
T  48086118 ccaaacacctagagttcaacataaatattatgagtttatt 48086157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 321 - 472
Target Start/End: Original strand, 25157637 - 25157790
Alignment:
Q  321 tgtcatttcaatctctaaactacctcattgcactcaaacttactataatcaacactaacaatccaatttctaact-atttcatcactaatatgcaaaata 419  Q
    ||||||||||||||||||| |  | ||||||||||||| | |||||||||||||  |||||| | |||||||||| ||||||||| ||| |||||||||     
T  25157637 tgtcatttcaatctctaaattgtcacattgcactcaaaatcactataatcaacatcaacaattccatttctaactaatttcatcattaacatgcaaaatt 25157736  T
Q  420 tcaattaatttttt-attgagacattttgtcaaacatctagagttcaacataaa 472  Q
    ||||  |||||||| ||| ||||||||| ||||||| |||||||||||||||||    
T  25157737 tcaaacaattttttcatttagacattttatcaaacacctagagttcaacataaa 25157790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 321 - 465
Target Start/End: Original strand, 16256186 - 16256331
Alignment:
Q  321 tgtcatttcaatctctaaactacctcattgcactcaaacttactataatcaacactaacaatccaatttctaact-atttcatcactaatatgcaaaata 419  Q
    |||||||||||||| |||||| || ||||||| ||||||| |||||||||||||||||||| ||||||||||||| ||||||||| ||| |  | ||| |    
T  16256186 tgtcatttcaatctataaactgccacattgcagtcaaactaactataatcaacactaacaaaccaatttctaactaatttcatcattaacaatccaaaaa 16256285  T
Q  420 tcaattaattttttattgagacattttgtcaaacatctagagttca 465  Q
     |||  || |||| ||||||| ||||| ||||||| ||||||||||    
T  16256286 acaaacaaattttcattgagaaattttatcaaacacctagagttca 16256331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 338 - 472
Target Start/End: Original strand, 16292735 - 16292870
Alignment:
Q  338 aactacctcattgcactcaaacttactataatcaacactaacaatccaatttctaacta-tttcatcactaatatgcaaaatatcaattaattttttatt 436  Q
    ||||||| ||||  ||||||| | |||| |||||||| ||||||||||||||||||||| ||| |||| ||| |||||| |||| ||  ||||||| |||    
T  16292735 aactaccccattatactcaaaatcactagaatcaacattaacaatccaatttctaactaattttatcattaacatgcaagatataaaacaatttttgatt 16292834  T
Q  437 gagacattttgtcaaacatctagagttcaacataaa 472  Q
    |||||||||| ||||||| |||||| ||||||||||    
T  16292835 gagacattttatcaaacacctagaggtcaacataaa 16292870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 346 - 483
Target Start/End: Original strand, 30228988 - 30229123
Alignment:
Q  346 cattgcactcaaacttactataatcaacactaacaatccaatttctaact-atttcatcactaatatgcaaaatatcaattaattttttattgagacatt 444  Q
    ||||||||||||| | ||||||||||||| |||||||||||||||||||| ||||||||| ||| |||||||| |||||  || |||| |||||||||||    
T  30228988 cattgcactcaaattcactataatcaacattaacaatccaatttctaactaatttcatcattaaaatgcaaaaaatcaaacaa-ttttcattgagacatt 30229086  T
Q  445 ttgtcaaacatctagagttcaacataaatattatgagtt 483  Q
    || |||||||   |||||||||| |||| | ||||||||    
T  30229087 ttatcaaaca--cagagttcaacctaaacaatatgagtt 30229123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 249 - 369
Target Start/End: Complemental strand, 25239920 - 25239800
Alignment:
Q  249 aaatcaattaatatttcattaagaaattttatcaaacacctagaattaaacataaacattatgagtacattatgtcatttcaatctctaaactacctcat 348  Q
    |||||||| || | |||||| ||| |||||||||||||| | || || |||| | | ||||||||| |||| ||| |||||||||||||||||||| |||    
T  25239920 aaatcaatcaacaattcattgagacattttatcaaacacttggagttcaacaaatatattatgagttcattgtgttatttcaatctctaaactaccacat 25239821  T
Q  349 tgcactcaaacttactataat 369  Q
    |||||||||||||||| ||||    
T  25239820 tgcactcaaacttactctaat 25239800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 410 - 482
Target Start/End: Original strand, 48085915 - 48085987
Alignment:
Q  410 atgcaaaatatcaattaattttttattgagacattttgtcaaacatctagagttcaacataaatattatgagt 482  Q
    |||||||| |||||||||||||| ||||||||||||| ||||||| ||||||||||||||||| |||| ||||    
T  48085915 atgcaaaaaatcaattaatttttcattgagacattttatcaaacacctagagttcaacataaaaattacgagt 48085987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 336 - 468
Target Start/End: Complemental strand, 13330510 - 13330377
Alignment:
Q  336 taaactacctcattgcactcaaacttactataatcaacactaacaatccaatttctaact-atttcatcactaatatgcaaaatatcaattaatttttta 434  Q
    ||||||||| ||||||| ||||||| ||||||||||||| |||||| ||||||||||||| ||||||||| ||| |   |||  |  ||  || |||| |    
T  13330510 taaactaccacattgcagtcaaactaactataatcaacattaacaaaccaatttctaactaatttcatcattaacactaaaacaaataaacaaattttca 13330411  T
Q  435 ttgagacattttgtcaaacatctagagttcaaca 468  Q
    |||||||||||| ||||||| |||||||||||||    
T  13330410 ttgagacattttatcaaacacctagagttcaaca 13330377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 426 - 487
Target Start/End: Original strand, 27663375 - 27663436
Alignment:
Q  426 aattttttattgagacattttgtcaaacatctagagttcaacataaatattatgagtttatt 487  Q
    |||||||| |||||||||||| ||||||| ||| ||||||||||||| ||||||||||||||    
T  27663375 aattttttgttgagacattttatcaaacacctaaagttcaacataaacattatgagtttatt 27663436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 262 - 374
Target Start/End: Original strand, 30229072 - 30229182
Alignment:
Q  262 tttcattaagaaattttatcaaacacctagaattaaacataaacattatgagtacattatgtcatttcaatctctaaactacctcattgcactcaaactt 361  Q
    ||||||| ||| ||||||||||||||  ||| || ||| |||||| ||||||| |||| ||||||||| |||||||||||||| ||||  | | ||||||    
T  30229072 tttcattgagacattttatcaaacac--agagttcaacctaaacaatatgagttcattgtgtcatttccatctctaaactaccacatttgagtgaaactt 30229169  T
Q  362 actataatcaaca 374  Q
    ||| |||||||||    
T  30229170 actctaatcaaca 30229182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 249 - 374
Target Start/End: Original strand, 48086087 - 48086212
Alignment:
Q  249 aaatcaattaatatttcattaagaaattttatcaaacacctagaattaaacataaacattatgagtacattatgtcatttcaatctctaaactacctcat 348  Q
    |||||||| ||| |||| || ||| |||| | |||||||||||| || |||||||| |||||||||  |||  |||||||||||||||||||||||  |     
T  48086087 aaatcaataaatttttcgtttagacatttaaccaaacacctagagttcaacataaatattatgagtttattgcgtcatttcaatctctaaactaccatac 48086186  T
Q  349 tgcactcaaacttactataatcaaca 374  Q
    || | | ||||||||| |||||||||    
T  48086187 tggagtgaaacttactctaatcaaca 48086212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 321 - 396
Target Start/End: Original strand, 2811271 - 2811346
Alignment:
Q  321 tgtcatttcaatctctaaactacctcattgcactcaaacttactataatcaacactaacaatccaatttctaacta 396  Q
    |||||||||||||  ||||||| | ||||||| ||||||| ||||||||||||  |||||| ||||||||||||||    
T  2811271 tgtcatttcaatccataaactaacacattgcagtcaaactaactataatcaaccataacaaaccaatttctaacta 2811346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 274 - 335
Target Start/End: Original strand, 27663391 - 27663452
Alignment:
Q  274 attttatcaaacacctagaattaaacataaacattatgagtacattatgtcatttcaatctc 335  Q
    ||||||||||||||||| | || ||||||||||||||||||  ||| |||||||||||||||    
T  27663391 attttatcaaacacctaaagttcaacataaacattatgagtttattgtgtcatttcaatctc 27663452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 337 - 467
Target Start/End: Original strand, 47829719 - 47829851
Alignment:
Q  337 aaactacctcattgcactcaaacttactataatcaacactaacaatccaatttctaact-atttcatcactaa-tatgcaaaatatcaattaatttttta 434  Q
    ||||||||  |||||| | ||||| ||||||||||||| |||||| ||||||| ||||| ||||||||| |||  || ||||| | ||| ||| |||| |    
T  47829719 aaactaccatattgcagttaaactaactataatcaacattaacaaaccaatttttaactaatttcatcattaacaatccaaaaaaacaaataaattttca 47829818  T
Q  435 ttgagacattttgtcaaacatctagagttcaac 467  Q
    |||||||||| | ||||||| ||||||| ||||    
T  47829819 ttgagacattatatcaaacacctagagtgcaac 47829851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 330 - 387
Target Start/End: Complemental strand, 23527009 - 23526952
Alignment:
Q  330 aatctctaaactacctcattgcactcaaacttactataatcaacactaacaatccaat 387  Q
    ||||| |||| |||| ||||||||||||||| |||||||||| || ||||||||||||    
T  23527009 aatctataaattaccacattgcactcaaactcactataatcatcattaacaatccaat 23526952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 330 - 387
Target Start/End: Original strand, 23527015 - 23527072
Alignment:
Q  330 aatctctaaactacctcattgcactcaaacttactataatcaacactaacaatccaat 387  Q
    ||||| |||| |||| ||||||||||||||| |||||||||| || ||||||||||||    
T  23527015 aatctataaattaccacattgcactcaaactcactataatcatcattaacaatccaat 23527072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 321 - 404
Target Start/End: Complemental strand, 7627397 - 7627313
Alignment:
Q  321 tgtcatttcaatctctaaactacctcattgcactcaaacttactataatcaacactaacaatccaatttctaact-atttcatca 404  Q
    |||||||||| ||  |||||||||  |||||| | ||||| ||||||||||||| |||||| ||||||| ||||| |||||||||    
T  7627397 tgtcatttcagtccgtaaactaccatattgcaataaaactaactataatcaacaataacaaaccaatttttaactaatttcatca 7627313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 321 - 381
Target Start/End: Complemental strand, 19196040 - 19195980
Alignment:
Q  321 tgtcatttcaatctctaaactacctcattgcactcaaacttactataatcaacactaacaa 381  Q
    |||||||||||| | ||||||||| ||||| | |||||| |||||||||||||| ||||||    
T  19196040 tgtcatttcaatatgtaaactaccacattgaagtcaaacatactataatcaacattaacaa 19195980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 320 - 381
Target Start/End: Original strand, 34440147 - 34440208
Alignment:
Q  320 atgtcatttcaatctctaaactacctcattgcactcaaacttactataatcaacactaacaa 381  Q
    ||||||||||||||  ||||||||| ||||||| |||||| || ||||||||| | ||||||    
T  34440147 atgtcatttcaatccgtaaactaccacattgcagtcaaacatattataatcaaaattaacaa 34440208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 320 - 396
Target Start/End: Original strand, 53347705 - 53347781
Alignment:
Q  320 atgtcatttcaatctctaaactacctcattgcactcaaacttactataatcaacactaacaatccaatttctaacta 396  Q
    ||||||||||||||  |||| |||| |||| || ||||||| ||||||||| ||| |||||| |  |||||||||||    
T  53347705 atgtcatttcaatccgtaaaataccacattacagtcaaactaactataatcgacattaacaaacatatttctaacta 53347781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 86; Significance: 7e-41; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 249 - 417
Target Start/End: Complemental strand, 31627324 - 31627155
Alignment:
Q  249 aaatcaattaatatttcattaagaaattttatcaaacacctagaattaaacataaacattatgagtacattatgtcatttcaatctctaaactacctcat 348  Q
    |||||||||||  ||||||| |||  |||||||||||||||||| || ||||||| ||||||||||  ||| |||||||||||||||||||||||| |||    
T  31627324 aaatcaattaaattttcattgagacgttttatcaaacacctagagttcaacataagcattatgagtttattgtgtcatttcaatctctaaactaccacat 31627225  T
Q  349 tgcactcaaacttactataatcaacactaacaatccaatttctaact-atttcatcactaatatgcaaaa 417  Q
    | |||||||||||||| || |||||  |||||||||||||||||||| ||||||||| ||| ||||||||    
T  31627224 tacactcaaacttactctattcaacgttaacaatccaatttctaactaatttcatcattaacatgcaaaa 31627155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 315 - 396
Target Start/End: Original strand, 5308082 - 5308163
Alignment:
Q  315 acattatgtcatttcaatctctaaactacctcattgcactcaaacttactataatcaacactaacaatccaatttctaacta 396  Q
    ||||| |||||||||||||||||||||||| ||||||||||||||| ||||||||||||| ||| ||| |||||||||||||    
T  5308082 acattgtgtcatttcaatctctaaactaccgcattgcactcaaactcactataatcaacattaagaattcaatttctaacta 5308163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 316 - 472
Target Start/End: Original strand, 27756948 - 27757104
Alignment:
Q  316 cattatgtcatttcaatctctaaactacctcattgcactcaaacttactataatcaacactaacaatccaatttctaact-atttcatcactaatat-gc 413  Q
    |||| |||||||||||||||||||||||   |||||||| ||||| ||| ||||||||| ||||||| |||||||||||| ||||||| | ||| || ||    
T  27756948 cattttgtcatttcaatctctaaactacaatattgcacttaaactcactttaatcaacattaacaattcaatttctaactaatttcataattaacatcgc 27757047  T
Q  414 aaaatatcaattaattttttattgagacattttgtcaaacatctagagttcaacataaa 472  Q
    |||| |||||  || |||| ||||||||| ||| |||||||  || |||||||||||||    
T  27757048 aaaa-atcaaacaaattttcattgagaca-tttatcaaacacataaagttcaacataaa 27757104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 410 - 487
Target Start/End: Complemental strand, 31627331 - 31627254
Alignment:
Q  410 atgcaaaatatcaattaattttttattgagacattttgtcaaacatctagagttcaacataaatattatgagtttatt 487  Q
    |||||||| ||||||||| |||| |||||||| |||| ||||||| ||||||||||||||||  ||||||||||||||    
T  31627331 atgcaaaaaatcaattaaattttcattgagacgttttatcaaacacctagagttcaacataagcattatgagtttatt 31627254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 321 - 467
Target Start/End: Original strand, 11807619 - 11807766
Alignment:
Q  321 tgtcatttcaatctctaaactacctcattgcactcaaacttactataatcaacactaacaatccaatttctaact-atttcatcactaatatgcaaaata 419  Q
    |||||||||||||  | ||||||| ||||||| |||||| |||||||||||||| |||| | ||||||||||||| |||| |||| ||| |  | ||| |    
T  11807619 tgtcatttcaatccgtgaactaccacattgcagtcaaacatactataatcaacattaactaaccaatttctaactaattttatcattaacaatctaaaaa 11807718  T
Q  420 tcaattaattttttattgagacattttgtcaaacatctagagttcaac 467  Q
     |||  || |||| | ||||||||||| ||||||||||||||| ||||    
T  11807719 acaaacaaattttcaatgagacattttatcaaacatctagagtccaac 11807766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 321 - 468
Target Start/End: Original strand, 37939623 - 37939771
Alignment:
Q  321 tgtcatttcaatctctaaactacctcattgcactcaaacttactataatcaacactaacaatccaatttctaac-tatttcatcactaatatgcaaaata 419  Q
    |||||||||||||  ||||||||| ||||| | |||||| ||||||| |||||| ||||||  |||||||||||  ||||||||| ||| |  |  || |    
T  37939623 tgtcatttcaatccgtaaactaccacattgtagtcaaacatactatattcaacattaacaaatcaatttctaacaaatttcatcattaacaatcttaaaa 37939722  T
Q  420 tcaattaattttttattgagacattttgtcaaacatctagagttcaaca 468  Q
    ||||  || |||  ||||||||||||| ||||||| |||||||||||||    
T  37939723 tcaaacaaatttccattgagacattttatcaaacacctagagttcaaca 37939771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 336 - 396
Target Start/End: Complemental strand, 20931296 - 20931236
Alignment:
Q  336 taaactacctcattgcactcaaacttactataatcaacactaacaatccaatttctaacta 396  Q
    ||||||||| ||||||| |||||| |||||||||||||| |||||| |||  |||||||||    
T  20931296 taaactaccacattgcaatcaaacatactataatcaacattaacaaaccatattctaacta 20931236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 321 - 404
Target Start/End: Original strand, 31118953 - 31119037
Alignment:
Q  321 tgtcatttcaatctctaaactacctcattgcactcaaacttactataatcaacactaacaatccaatttctaact-atttcatca 404  Q
    |||||||||||||  |||| |||| ||||| | ||||||| ||||||||||||| |||||| |  |||||||||| |||||||||    
T  31118953 tgtcatttcaatccgtaaagtaccacattgtagtcaaactaactataatcaacattaacaaacatatttctaactaatttcatca 31119037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 321 - 390
Target Start/End: Original strand, 15424146 - 15424215
Alignment:
Q  321 tgtcatttcaatctctaaactacctcattgcactcaaacttactataatcaacactaacaatccaatttc 390  Q
    ||||||||||||   ||||||||| |||||||  |||||| ||||||||||||| |||||| | ||||||    
T  15424146 tgtcatttcaattcgtaaactaccacattgcaaacaaactaactataatcaacattaacaaactaatttc 15424215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 323 - 396
Target Start/End: Complemental strand, 27333282 - 27333209
Alignment:
Q  323 tcatttcaatctctaaactacctcattgcactcaaacttactataatcaacactaacaatccaatttctaacta 396  Q
    |||||||||||  |||||||||   ||||| |||||| |||||||||||||| |||||| |||  |||||||||    
T  27333282 tcatttcaatccgtaaactaccatgttgcagtcaaacatactataatcaacattaacaaaccatattctaacta 27333209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 79; Significance: 1e-36; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 315 - 472
Target Start/End: Original strand, 2413126 - 2413283
Alignment:
Q  315 acattatgtcatttcaatctctaaactacctcattgcactcaaacttactataatcaacactaacaatccaatttctaact-atttcatcactaatatgc 413  Q
    ||||| |||||||||||||||||||||| | ||||||||||||||| || |||||||||| |||| ||||||||||||||| ||||||||| ||| ||||    
T  2413126 acattgtgtcatttcaatctctaaactatcacattgcactcaaactcacgataatcaacattaacgatccaatttctaactaatttcatcattaacatgc 2413225  T
Q  414 aaaatatcaattaattttttattgagacattttgtcaaacatctagagttcaacataaa 472  Q
    ||||| || |  ||||||| ||||||||||||| ||||||| ||||| |||||||||||    
T  2413226 aaaat-tcgaacaatttttcattgagacattttttcaaacacctagaattcaacataaa 2413283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 321 - 439
Target Start/End: Original strand, 31010982 - 31011101
Alignment:
Q  321 tgtcatttcaatctctaaactacctcattgcactcaaacttactataatcaacactaacaatccaatttctaact-atttcatcactaatatgcaaaata 419  Q
    |||||||||||| ||||||||||| ||||||||||||||||||||||||||| | ||| |||||||||||||||| ||||||||| ||||||||||||||    
T  31010982 tgtcatttcaatatctaaactaccacattgcactcaaacttactataatcaatattaataatccaatttctaactaatttcatcattaatatgcaaaata 31011081  T
Q  420 tcaattaattttttattgag 439  Q
    ||||  ||||||| ||||||    
T  31011082 tcaaacaatttttcattgag 31011101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 327 - 472
Target Start/End: Complemental strand, 5241700 - 5241554
Alignment:
Q  327 ttcaatctctaaactacctcattgcactcaaacttactataatcaacactaacaatccaatttctaact-atttcatcactaa-tatgcaaaatatcaat 424  Q
    ||||||||||||| |||| |||||||||| || | ||||||||||||| ||| |||||||||||||||| ||||||||| |||  |||||||| |||||     
T  5241700 ttcaatctctaaattaccacattgcactctaaatcactataatcaacattaataatccaatttctaactaatttcatcattaacaatgcaaaa-atcaaa 5241602  T
Q  425 taattttttattgagacattttgtcaaacatctagagttcaacataaa 472  Q
    ||| |||| |||| || ||||| ||||||| ||||| |||||||||||    
T  5241601 taaattttcattgggatattttatcaaacacctagatttcaacataaa 5241554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 321 - 393
Target Start/End: Original strand, 16728493 - 16728565
Alignment:
Q  321 tgtcatttcaatctctaaactacctcattgcactcaaacttactataatcaacactaacaatccaatttctaa 393  Q
    |||||||||||||| ||||||||   |||||||||||||| ||||||||||||| ||||||||||||||||||    
T  16728493 tgtcatttcaatctataaactactaaattgcactcaaactcactataatcaacattaacaatccaatttctaa 16728565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 321 - 393
Target Start/End: Original strand, 17705565 - 17705637
Alignment:
Q  321 tgtcatttcaatctctaaactacctcattgcactcaaacttactataatcaacactaacaatccaatttctaa 393  Q
    |||||||||||||| ||||||||   |||||||||||||| ||||||||||||| ||||||||||||||||||    
T  17705565 tgtcatttcaatctataaactactaaattgcactcaaactcactataatcaacattaacaatccaatttctaa 17705637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 321 - 468
Target Start/End: Complemental strand, 13609046 - 13608898
Alignment:
Q  321 tgtcatttcaatctctaaactacctcattgcactcaaacttactataatcaacactaacaatccaatttctaact-atttcatcactaa-tatgcaaaat 418  Q
    |||||||||||||  |||| |||| ||||||| ||||||| ||||||||||||| |||||| ||||||||||||| ||||||||| |||  ||||||||     
T  13609046 tgtcatttcaatccgtaaattaccacattgcagtcaaactaactataatcaacattaacaaaccaatttctaactaatttcatcattaacaatgcaaaa- 13608948  T
Q  419 atcaattaattttttattgagacattttgtcaaacatctagagttcaaca 468  Q
    | |||  || |||| ||||||||||||| || ||   |||||||||||||    
T  13608947 aacaaacaaattttcattgagacattttatcgaattcctagagttcaaca 13608898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 321 - 468
Target Start/End: Original strand, 22518006 - 22518154
Alignment:
Q  321 tgtcatttcaatctctaaactacctcattgcactcaaacttactataatcaacactaacaatccaatttctaact-atttcatcactaa-tatgcaaaat 418  Q
    |||||||||| ||  ||||||||| ||||||| ||||||| ||||||||||||| |||||| ||||||||||||| ||||||||| |||  || |||||     
T  22518006 tgtcatttcagtccgtaaactaccacattgcaatcaaactaactataatcaacaataacaaaccaatttctaactaatttcatcattaacaatccaaaac 22518105  T
Q  419 atcaattaattttttattgagacattttgtcaaacatctagagttcaaca 468  Q
    | |||  ||  ||| |||||||||||||  |||||| |||||||||||||    
T  22518106 a-caaacaaaatttcattgagacattttaacaaacacctagagttcaaca 22518154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 314 - 390
Target Start/End: Original strand, 9652306 - 9652382
Alignment:
Q  314 tacattatgtcatttcaatctctaaactacctcattgcactcaaacttactataatcaacactaacaatccaatttc 390  Q
    |||||| |||||||||| ||||||| ||||| ||||||||||||||| ||||||||||| | ||||||| |||||||    
T  9652306 tacattgtgtcatttcattctctaagctaccacattgcactcaaactcactataatcaatattaacaattcaatttc 9652382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 321 - 467
Target Start/End: Complemental strand, 39561624 - 39561477
Alignment:
Q  321 tgtcatttcaatctctaaactacctcattgcactcaaacttactataatcaacactaacaatccaatttctaact-atttcatcactaa-tatgcaaaat 418  Q
    |||||||||||||| | ||||||  |||||||||| |||| |||| |||||||| ||| || ||||||||||||| | |||||||||||  |||||||||    
T  39561624 tgtcatttcaatctgtgaactacaacattgcactcgaactcactacaatcaacattaataaaccaatttctaactaacttcatcactaacaatgcaaaat 39561525  T
Q  419 atcaattaattttttattgagacattttgtcaaacatctagagttcaac 467  Q
    | |||  || |||| |||||||||||||  |||||| ||||||| ||||    
T  39561524 a-caaacaaattttcattgagacattttaccaaacacctagagtgcaac 39561477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 336 - 468
Target Start/End: Complemental strand, 24576438 - 24576305
Alignment:
Q  336 taaactacctcattgcactcaaacttactataatcaacactaacaatccaatttctaacta-tttcatcactaata-tgcaaaatatcaattaatttttt 433  Q
    ||||||||| || |||| |||||| ||||||| |||||| |||||| ||||||| |||||| |||||||  ||||| | ||||| | ||| ||| ||||     
T  24576438 taaactaccacactgcagtcaaacatactatattcaacattaacaaaccaatttttaactaatttcatcgttaataattcaaaaaa-caaataaattttc 24576340  T
Q  434 attgagacattttgtcaaacatctagagttcaaca 468  Q
    ||||||||||||| ||||||||||| |||||||||    
T  24576339 attgagacattttatcaaacatctaaagttcaaca 24576305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 285 - 374
Target Start/End: Original strand, 31011102 - 31011191
Alignment:
Q  285 cacctagaattaaacataaacattatgagtacattatgtcatttcaatctctaaactacctcattgcactcaaacttactataatcaaca 374  Q
    |||||||| || |||||||||||||||||| |||  |||||||||||||| |||||| || ||||  | ||||||||||| |||||||||    
T  31011102 cacctagagttcaacataaacattatgagttcatagtgtcatttcaatctataaactgccacatttgagtcaaacttactctaatcaaca 31011191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 321 - 404
Target Start/End: Original strand, 15826101 - 15826185
Alignment:
Q  321 tgtcatttcaatctctaaactacctcattgcactcaaacttactataatcaacactaacaatccaatttctaact-atttcatca 404  Q
    |||||||||||||  ||||||| | ||||||| ||||||| ||||||||||||| ||||||  |||||||||||| |||||||||    
T  15826101 tgtcatttcaatccgtaaactatcacattgcagtcaaactaactataatcaacattaacaaatcaatttctaactaatttcatca 15826185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 321 - 393
Target Start/End: Original strand, 17715581 - 17715653
Alignment:
Q  321 tgtcatttcaatctctaaactacctcattgcactcaaacttactataatcaacactaacaatccaatttctaa 393  Q
    |||||||||||||| ||||||||   |||||||||||||| |||||||||| || ||||||||||| ||||||    
T  17715581 tgtcatttcaatctataaactactaaattgcactcaaactcactataatcagcattaacaatccaacttctaa 17715653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 347 - 463
Target Start/End: Complemental strand, 12346102 - 12345985
Alignment:
Q  347 attgcactcaaacttactataatcaacactaacaatccaatttctaact-atttcatcactaa-tatgcaaaatatcaattaattttttattgagacatt 444  Q
    |||||| ||||||| || |||||||||| |||||| | ||||||||||| ||||||||| |||  |||||||| | |||  || |||| |||||||||||    
T  12346102 attgcagtcaaactaacaataatcaacattaacaagcaaatttctaactaatttcatcattaacaatgcaaaa-aacaaacaaattttcattgagacatt 12346004  T
Q  445 ttgtcaaacatctagagtt 463  Q
    || | ||||||||||||||    
T  12346003 ttataaaacatctagagtt 12345985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 321 - 381
Target Start/End: Original strand, 21065762 - 21065822
Alignment:
Q  321 tgtcatttcaatctctaaactacctcattgcactcaaacttactataatcaacactaacaa 381  Q
    |||||||||||||  ||||||||| ||||| | |||||| |||||||||||||| ||||||    
T  21065762 tgtcatttcaatccataaactaccacattgtagtcaaacatactataatcaacattaacaa 21065822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 320 - 394
Target Start/End: Original strand, 6715708 - 6715782
Alignment:
Q  320 atgtcatttcaatctctaaactacctcattgcactcaaacttactataatcaacactaacaatccaatttctaac 394  Q
    ||||||||||||||  ||||||| | ||||||| ||||||| ||||||| | ||| ||||||  |||||||||||    
T  6715708 atgtcatttcaatccgtaaactatcacattgcagtcaaactaactataacctacaataacaaatcaatttctaac 6715782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 72; Significance: 2e-32; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 249 - 396
Target Start/End: Original strand, 6798575 - 6798722
Alignment:
Q  249 aaatcaattaatatttcattaagaaattttatcaaacacctagaattaaacataaacattatgagtacattatgtcatttcaatctctaaactacctcat 348  Q
    |||||||||| | ||||||| ||| ||||||| ||||||||||| || |||||||||||  |||||  ||  |||||||||||||||||| ||||| |||    
T  6798575 aaatcaattattttttcattgagacattttattaaacacctagagttcaacataaacatcgtgagtttatggtgtcatttcaatctctaatctaccacat 6798674  T
Q  349 tgcactcaaacttactataatcaacactaacaatccaatttctaacta 396  Q
    |||||||||||||||| |||||||||  ||||||| ||||||||||||    
T  6798675 tgcactcaaacttactctaatcaacatcaacaatctaatttctaacta 6798722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 249 - 417
Target Start/End: Complemental strand, 16003443 - 16003274
Alignment:
Q  249 aaatcaattaatatttcattaagaaattttatcaaacacctagaattaaacataaacattatgagtacattatgtcatttcaatctctaaactacctcat 348  Q
    |||||||||||| ||||||  ||| ||||||||||||| ||| |  | |||||||| ||||||||   ||| | ||||| ||||||||||| |||  |||    
T  16003443 aaatcaattaatttttcatagagacattttatcaaacagctatagctcaacataaaaattatgaggttattgtctcattccaatctctaaattacgacat 16003344  T
Q  349 tgcactcaaacttactataatcaacactaacaatccaatttctaact-atttcatcactaatatgcaaaa 417  Q
    |||||||||||||||||||||||||| |||||||||||||||||| | ||||||||| ||| ||||||||    
T  16003343 tgcactcaaacttactataatcaacattaacaatccaatttctaaataatttcatcattaacatgcaaaa 16003274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 321 - 471
Target Start/End: Original strand, 28838259 - 28838410
Alignment:
Q  321 tgtcatttcaatctctaaactacctcattgcactcaaacttactataatcaacactaacaatccaatttctaact-atttcatcactaatatgcaaaata 419  Q
    |||||||||||||| ||||||||| ||||||||||||||| ||||||||||||| |||||||||||||||||||| ||||||||| ||| |    ||| |    
T  28838259 tgtcatttcaatctgtaaactaccacattgcactcaaactcactataatcaacattaacaatccaatttctaactaatttcatcattaacaatataaaaa 28838358  T
Q  420 tcaattaattttttattgagacattttgtcaaacatctagagttcaacataa 471  Q
     |||  || |||| ||||||| ||||| ||||||| ||||||||||||||||    
T  28838359 acaaacaaattttcattgagatattttatcaaacacctagagttcaacataa 28838410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 321 - 468
Target Start/End: Original strand, 9238590 - 9238737
Alignment:
Q  321 tgtcatttcaatctctaaactacctcattgcactcaaacttactataatcaacactaacaatccaatttctaact-atttcatcactaatatgcaaaata 419  Q
    |||||||||||||  ||||||||| ||||||| ||||||| ||||||||||||| |||||| ||||||| ||| | ||||||||| ||| |   |||| |    
T  9238590 tgtcatttcaatccgtaaactaccacattgcagtcaaactaactataatcaacattaacaaaccaatttataattaatttcatcattaacaatgaaaa-a 9238688  T
Q  420 tcaattaattttttattgagacattttgtcaaacatctagagttcaaca 468  Q
     |||  || |||| ||||||||||||| |||||||  ||||||||||||    
T  9238689 acaaacaaattttcattgagacattttatcaaacacgtagagttcaaca 9238737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 325 - 467
Target Start/End: Complemental strand, 26489307 - 26489164
Alignment:
Q  325 atttcaatctctaaactacctcattgcactcaaacttactataatcaacactaacaatccaatttctaact-atttcatcactaa-tatgcaaaatatca 422  Q
    |||||||| | ||||||||| |||| |||||||| ||||||||||||||| ||||||  |||||| ||||| ||||||||| |||  |||||||| | ||    
T  26489307 atttcaatatgtaaactaccgcatttcactcaaatttactataatcaacattaacaaatcaatttttaactaatttcatcattaacaatgcaaaa-agca 26489209  T
Q  423 attaattttttattgagacattttgtcaaacatctagagttcaac 467  Q
    | ||| | ||  |||||||||||| ||||||| ||||||||||||    
T  26489208 aataaatgttctttgagacattttatcaaacacctagagttcaac 26489164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 410 - 487
Target Start/End: Complemental strand, 16003450 - 16003373
Alignment:
Q  410 atgcaaaatatcaattaattttttattgagacattttgtcaaacatctagagttcaacataaatattatgagtttatt 487  Q
    |||||||| |||||||||||||| || |||||||||| ||||||| ||| || |||||||||| |||||||| |||||    
T  16003450 atgcaaaaaatcaattaatttttcatagagacattttatcaaacagctatagctcaacataaaaattatgaggttatt 16003373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 321 - 394
Target Start/End: Complemental strand, 16995907 - 16995834
Alignment:
Q  321 tgtcatttcaatctctaaactacctcattgcactcaaacttactataatcaacactaacaatccaatttctaac 394  Q
    |||||||||||||| ||||||||| ||||||| ||||||| ||||||||||||  ||||||  |||||||||||    
T  16995907 tgtcatttcaatctgtaaactaccacattgcaatcaaactaactataatcaactataacaaatcaatttctaac 16995834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 410 - 486
Target Start/End: Original strand, 6798568 - 6798644
Alignment:
Q  410 atgcaaaatatcaattaattttttattgagacattttgtcaaacatctagagttcaacataaatattatgagtttat 486  Q
    |||||||| |||||||| ||||| ||||||||||||| | ||||| ||||||||||||||||| ||  |||||||||    
T  6798568 atgcaaaaaatcaattattttttcattgagacattttattaaacacctagagttcaacataaacatcgtgagtttat 6798644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 320 - 407
Target Start/End: Complemental strand, 14095186 - 14095098
Alignment:
Q  320 atgtcatttcaatctctaaactacctcattgcactcaaacttactataatcaacactaacaatccaatttctaact-atttcatcacta 407  Q
    ||||||||||||||  ||||||||| |||||  ||||||| |||||||||||||| |||||| |||  |||||||| ||||||||||||    
T  14095186 atgtcatttcaatccgtaaactaccacattgttctcaaacatactataatcaacaataacaaaccatattctaactaatttcatcacta 14095098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 325 - 409
Target Start/End: Complemental strand, 38187702 - 38187614
Alignment:
Q  325 atttcaatctctaaactacctcattgcactcaaacttactataat---caacactaacaatccaatttctaact-atttcatcactaat 409  Q
    |||||||||||||| ||||| ||||||| | ||||| ||||||||   ||||| |||||||||||||||||||| ||||||||| ||||    
T  38187702 atttcaatctctaacctaccacattgcattgaaactcactataatgatcaacattaacaatccaatttctaactaatttcatcattaat 38187614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 321 - 396
Target Start/End: Complemental strand, 22721690 - 22721615
Alignment:
Q  321 tgtcatttcaatctctaaactacctcattgcactcaaacttactataatcaacactaacaatccaatttctaacta 396  Q
    |||||||||||||  |||||| || ||||||| ||||||| ||||||||||| | |||||| |  |||||||||||    
T  22721690 tgtcatttcaatccgtaaactgccacattgcagtcaaactaactataatcaaaattaacaaacatatttctaacta 22721615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 429 - 471
Target Start/End: Original strand, 6298129 - 6298171
Alignment:
Q  429 tttttattgagacattttgtcaaacatctagagttcaacataa 471  Q
    |||| ||||||||||||| ||||||| ||||||||||||||||    
T  6298129 ttttgattgagacattttatcaaacacctagagttcaacataa 6298171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 426 - 472
Target Start/End: Original strand, 29371493 - 29371539
Alignment:
Q  426 aattttttattgagacattttgtcaaacatctagagttcaacataaa 472  Q
    ||||||| |||| |||||||| ||||||| |||||||||||||||||    
T  29371493 aatttttcattgtgacattttctcaaacacctagagttcaacataaa 29371539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 320 - 396
Target Start/End: Original strand, 37229756 - 37229832
Alignment:
Q  320 atgtcatttcaatctctaaactacctcattgcactcaaacttactataatcaacactaacaatccaatttctaacta 396  Q
    ||||||||||||||  ||||||||  ||||||| |||||| || ||||||||| | |||||| |||  |||||||||    
T  37229756 atgtcatttcaatccataaactacgacattgcaatcaaacatattataatcaaaattaacaaaccatattctaacta 37229832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 4e-24; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 321 - 468
Target Start/End: Complemental strand, 17755070 - 17754922
Alignment:
Q  321 tgtcatttcaatctctaaactacctcattgcactcaaacttactataatcaacactaacaatccaatttctaact-atttcatcactaata-tgcaaaat 418  Q
    ||||| |||||||| ||||||||| ||||||| ||||||| ||||||||||||| |||||||||||||||||||| ||||||||| ||| | ||||| |     
T  17755070 tgtcaattcaatctgtaaactaccacattgcaatcaaactcactataatcaacattaacaatccaatttctaactaatttcatcattaacagtgcaaga- 17754972  T
Q  419 atcaattaattttttattgagacattttgtcaaacatctagagttcaaca 468  Q
    | |||  || |||| ||||||||||||| |||||||  ||||||||||||    
T  17754971 aacaaacaaattttcattgagacattttatcaaacacttagagttcaaca 17754922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 320 - 381
Target Start/End: Complemental strand, 35012528 - 35012467
Alignment:
Q  320 atgtcatttcaatctctaaactacctcattgcactcaaacttactataatcaacactaacaa 381  Q
    ||||||||||||||  ||||||||| ||||||| |||||| || ||||||||| | ||||||    
T  35012528 atgtcatttcaatcagtaaactaccgcattgcaatcaaacatattataatcaaaattaacaa 35012467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0408 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0408
Description:

Target: scaffold0408; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 320 - 407
Target Start/End: Complemental strand, 5528 - 5440
Alignment:
Q  320 atgtcatttcaatctctaaactacctcattgcactcaaacttactataatcaacactaacaatccaatttctaact-atttcatcacta 407  Q
    ||||||||||||||  ||||||||| |||||  ||||||| |||||||||||||| |||||| |||  |||||||| ||||||||||||    
T  5528 atgtcatttcaatccgtaaactaccacattgttctcaaacatactataatcaacaataacaaaccatattctaactaatttcatcacta 5440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 274 - 404
Target Start/End: Complemental strand, 326278 - 326148
Alignment:
Q  274 attttatcaaacacctagaattaaacataaacattatgagtacattatgtcatttcaatctctaaactacctcattgcactcaaacttactataatcaac 373  Q
    |||||||||||||| | || || |||||| |||||||  |||| || | | |||||||||||||||||||   |||||| ||||||||||| |||| |||    
T  326278 attttatcaaacacttggagttcaacatatacattataggtactttgttttatttcaatctctaaactactaaattgcattcaaacttactctaataaac 326179  T
Q  374 actaacaatccaatttctaactatttcatca 404  Q
    | | ||| ||| |||||||| ||||| ||||    
T  326178 attcacagtcctatttctaagtatttgatca 326148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 320 - 396
Target Start/End: Original strand, 28540800 - 28540876
Alignment:
Q  320 atgtcatttcaatctctaaactacctcattgcactcaaacttactataatcaacactaacaatccaatttctaacta 396  Q
    ||||||||||||||  ||||||||| ||||||| |||||| || ||||||||||| |||||| |||  |||||||||    
T  28540800 atgtcatttcaatccgtaaactaccacattgcagtcaaacatattataatcaacattaacaaaccatattctaacta 28540876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 321 - 390
Target Start/End: Original strand, 23348832 - 23348900
Alignment:
Q  321 tgtcatttcaatctctaaactacctcattgcactcaaacttactataatcaacactaacaatccaatttc 390  Q
    ||||||||||||| |||||||||| | ||||| ||||||| ||||||||||||| |||||| | ||||||    
T  23348832 tgtcatttcaatc-ctaaactaccacgttgcagtcaaactaactataatcaacattaacaaactaatttc 23348900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 321 - 404
Target Start/End: Original strand, 43784790 - 43784874
Alignment:
Q  321 tgtcatttcaatctctaaactacctcattgcactcaaacttactataatcaacactaacaatccaatttctaact-atttcatca 404  Q
    |||||||| | ||| ||||||| | ||||||| |||||| |||||||||||||| |||||| |||  |||||||| |||||||||    
T  43784790 tgtcattttagtctgtaaactatcacattgcagtcaaacatactataatcaacaataacaaaccatattctaactaatttcatca 43784874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 320 - 396
Target Start/End: Complemental strand, 50907841 - 50907765
Alignment:
Q  320 atgtcatttcaatctctaaactacctcattgcactcaaacttactataatcaacactaacaatccaatttctaacta 396  Q
    |||||||||||| |  ||||||||| ||||||| |||||| || ||||||||||| |||||| |||  |||||||||    
T  50907841 atgtcatttcaaaccgtaaactaccacattgcagtcaaacatattataatcaacattaacaaaccatattctaacta 50907765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 404
Target Start/End: Original strand, 3377335 - 3377404
Alignment:
Q  336 taaactacctcattgcactcaaacttactataatcaacactaacaatccaatttctaact-atttcatca 404  Q
    |||||||||  |||||| |||||| |||||||||||||| |||||| |||  |||||||| |||||||||    
T  3377335 taaactaccatattgcagtcaaacatactataatcaacattaacaaaccatattctaactaatttcatca 3377404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 321 - 394
Target Start/End: Original strand, 24965445 - 24965518
Alignment:
Q  321 tgtcatttcaatctctaaactacctcattgcactcaaacttactataatcaacactaacaatccaatttctaac 394  Q
    ||||||||||||||  |||||| | ||||||| || |||| ||||||||||||| |||||| |  |||||||||    
T  24965445 tgtcatttcaatctgcaaactatcacattgcagtctaactaactataatcaacattaacaaacatatttctaac 24965518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 321 - 394
Target Start/End: Complemental strand, 32646405 - 32646332
Alignment:
Q  321 tgtcatttcaatctctaaactacctcattgcactcaaacttactataatcaacactaacaatccaatttctaac 394  Q
    |||||||||||||| ||||||||| ||||||| ||| ||| |||| |||||||  ||||||  ||||| |||||    
T  32646405 tgtcatttcaatctgtaaactaccacattgcagtcagactaactacaatcaactataacaaatcaattgctaac 32646332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 320 - 381
Target Start/End: Original strand, 33298637 - 33298698
Alignment:
Q  320 atgtcatttcaatctctaaactacctcattgcactcaaacttactataatcaacactaacaa 381  Q
    ||||||||||||||  ||||||||| ||||||| |||||| || ||||||||| | ||||||    
T  33298637 atgtcatttcaatccgtaaactaccacattgcagtcaaacatattataatcaaaattaacaa 33298698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1212 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold1212
Description:

Target: scaffold1212; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 320 - 396
Target Start/End: Original strand, 1235 - 1311
Alignment:
Q  320 atgtcatttcaatctctaaactacctcattgcactcaaacttactataatcaacactaacaatccaatttctaacta 396  Q
    ||||||||||||||  ||||||||| | ||||| |||||| || ||||||||||| |||||| |||  |||||||||    
T  1235 atgtcatttcaatccgtaaactaccactttgcagtcaaacatattataatcaacattaacaaaccatattctaacta 1311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 322 - 394
Target Start/End: Original strand, 34212 - 34284
Alignment:
Q  322 gtcatttcaatctctaaactacctcattgcactcaaacttactataatcaacactaacaatccaatttctaac 394  Q
    ||||||||||||  ||||||||| ||||| | ||||||| ||||||||||||| |||||| |  |||||||||    
T  34212 gtcatttcaatccgtaaactaccacattgtagtcaaactaactataatcaacattaacaaacatatttctaac 34284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0046 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0046
Description:

Target: scaffold0046; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 321 - 394
Target Start/End: Original strand, 74766 - 74839
Alignment:
Q  321 tgtcatttcaatctctaaactacctcattgcactcaaacttactataatcaacactaacaatccaatttctaac 394  Q
    ||||||||||||||  |||||| | ||||||| || |||| ||||||||||||| |||||| |  |||||||||    
T  74766 tgtcatttcaatctgcaaactatcacattgcagtctaactaactataatcaacattaacaaacatatttctaac 74839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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