View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4912-Insertion-6 (Length: 359)
Name: NF4912-Insertion-6
Description: NF4912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4912-Insertion-6 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 7 - 359
Target Start/End: Original strand, 9160257 - 9160609
Alignment:
| Q |
7 |
aaaacttcaatattttcgtaagctgaggtatgtcttcttctacatgtatatatcagtagcacaaagaaaactacaaggccaagcacaaatctcattataa |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |||||||||||||| |
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| T |
9160257 |
aaaacttcaatattttcgtaagctgaggtatgtcttcttctacatgtatatatcaatagcacaaagaaaactacaaggcctagcataaatctcattataa |
9160356 |
T |
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| Q |
107 |
atgatggcaagagataccttccacttattcttcctaattcaatggcaattttagaatcagaaactttggataaatcaaaggctccacctaataattccga |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |
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| T |
9160357 |
atgatggcaagagataccttccacttattcttcctaattcaatggcaattttagaatcagaaactttggataaatcaaaggctccacctaataatactga |
9160456 |
T |
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| Q |
207 |
acttcttttcacaccgactatttggagtagtcctgtacaagttataccacgnnnnnnncaataagaacttgtaataacattattctgtgacttaacttga |
306 |
Q |
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| T |
9160457 |
acttcttttcacgccgactatttggagtagtcctgtacaagttataccacgaaaaaaacaataagaacttgtaataacattattctgtgacttaacttga |
9160556 |
T |
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| Q |
307 |
aatttaagataaagaacaatgaaaataaaaacacaacaaacattacatactga |
359 |
Q |
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| T |
9160557 |
aatttaagataaagaacaatgaaaataaaaacacaacaaacattacatactga |
9160609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 154; Significance: 1e-81; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 7 - 304
Target Start/End: Complemental strand, 9317735 - 9317435
Alignment:
| Q |
7 |
aaaacttcaatattttcgtaagctgaggtatgtcttcttctacatgtatatatcagtagcacaaagaaaactacaaggccaagcacaaatctcattataa |
106 |
Q |
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||||||||||||||||||||| ||||| |||| |||||| |||||||||||||| |||||||||||||||||||||||| | ||||||||||| | |
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| T |
9317735 |
aaaacttcaatattttcgtaaattgaggcatgttttcttcgacatgtatatatcaatagcacaaagaaaactacaaggcccgtcgtaaatctcattacca |
9317636 |
T |
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| Q |
107 |
atgatggcaagagataccttccacttattcttcctaattcaatggcaattttagaatcagaaact---ttggataaatcaaaggctccacctaataattc |
203 |
Q |
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|||||||||||| |||||||||||||||||||||||||| |||||||||||| |||||||||||| |||||||||||||| |||||||| |||||| |
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| T |
9317635 |
atgatggcaagatataccttccacttattcttcctaatttaatggcaattttggaatcagaaactttgttggataaatcaaattctccacctgctaattc |
9317536 |
T |
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| Q |
204 |
cgaacttcttttcacaccgactatttggagtagtcctgtacaagttataccacgnnnnnnncaataagaacttgtaataacattattctgtgacttaact |
303 |
Q |
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| T |
9317535 |
tgaactttttgtcacgccgactatttggagtagtcctgtacaagttataccacgaaaaaaaaaaaaagaacttgtaataacattattatctgacttaact |
9317436 |
T |
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| Q |
304 |
t |
304 |
Q |
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| T |
9317435 |
t |
9317435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 55 - 174
Target Start/End: Complemental strand, 9348616 - 9348497
Alignment:
| Q |
55 |
tatatcagtagcacaaagaaaactacaaggccaagcacaaatctcattataaatgatggcaagagataccttccacttattcttcctaattcaatggcaa |
154 |
Q |
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||||||| | |||||||||||||||||||||| | || |||||||||||||||||||||||||||||||||| ||||| ||||||| |||| |||| ||| |
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| T |
9348616 |
tatatcaattgcacaaagaaaactacaaggcctaccataaatctcattataaatgatggcaagagataccttgcacttgttcttccgaattgaatgccaa |
9348517 |
T |
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| Q |
155 |
ttttagaatcagaaactttg |
174 |
Q |
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| T |
9348516 |
ttctagaatcagaaactttg |
9348497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 35 - 98
Target Start/End: Complemental strand, 9254445 - 9254382
Alignment:
| Q |
35 |
tatgtcttcttctacatgtatatatcagtagcacaaagaaaactacaaggccaagcacaaatct |
98 |
Q |
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| T |
9254445 |
tatgtcttctccgacaagtatatatcaatagcacaaagaaaaccagaaggcccaggacaaatct |
9254382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 7 - 162
Target Start/End: Complemental strand, 15926641 - 15926486
Alignment:
| Q |
7 |
aaaacttcaatattttcgtaagctgaggtatgtcttcttctacatgtatatatcagtagcacaaagaaaacta-caaggccaagcacaaatctcattata |
105 |
Q |
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||||||||||||||||||||| |||| ||||||| |||| |||||||||||||| ||| ||||||||||| | || |||| | |||||||| |||| |
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| T |
15926641 |
aaaacttcaatattttcgtaaattgagttatgtctgcttcgacatgtatatatcaatagaacaaagaaaacaatgaatcccaatga-aaatctcactata |
15926543 |
T |
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| Q |
106 |
aatgatggcaagagataccttccacttattcttcctaattcaatggcaattttagaa |
162 |
Q |
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| T |
15926542 |
agtgatggcaagatatatcttcctgtgactcttcctatctcaatgccaattttagaa |
15926486 |
T |
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