View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4912_high_1_N (Length: 401)
Name: NF4912_high_1_N
Description: NF4912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4912_high_1_N |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 7 - 401
Target Start/End: Complemental strand, 42692409 - 42692014
Alignment:
| Q |
7 |
agagagaaaaagttgtaagctatcagatttaagcaataagctaattcaattaacttatcaagtaagttagaaggtaataacagtaagctataatctcatg |
106 |
Q |
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| T |
42692409 |
agagagaaaaagttgtaagctatcagatttaagcaataagctaattcaattaacttatcaagtaagttagaaggtaataacagtaagctataatctcatg |
42692310 |
T |
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| Q |
107 |
aggaagnnnnnnntgaaacaagtctgtttttctcatacaagcttatagactataggcttaaaatccagcattgccaaacagagccttaatctaaccatta |
206 |
Q |
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| T |
42692309 |
aggaagaaaaaaatgaaacaagtctgtttttctcatataagcttatagactataagcttaaaatccagcattggcaaacagagccttaatctaaccatta |
42692210 |
T |
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| Q |
207 |
ctaagggatagttttcagtttatagaagaaaaaataaaggctgagataacttcctaatactactaataaacaaattaacattttcaaatgttaaatttcc |
306 |
Q |
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| T |
42692209 |
ctaagggatagttttcagtttatgcaagaaaaaataaaggcagagataacttcctaatactactaataaacaaattaacattttcaaatgttaaatttcc |
42692110 |
T |
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| Q |
307 |
tctaatgtcaatttcggtgggctgcctccatacaaagttggctttaaact-gaaccaacaagtggacggttaaattgtaagtgttagattaatcgg |
401 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |||||||||||||||| |
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| T |
42692109 |
tctaatgtcaatttcggtgggctgcctccatacaaagttggctttaaactagaaccaacaagtggacggtaaaattgtacgtgttagattaatcgg |
42692014 |
T |
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