View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4912_high_2 (Length: 371)
Name: NF4912_high_2
Description: NF4912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4912_high_2 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 371
Target Start/End: Complemental strand, 7226708 - 7226339
Alignment:
| Q |
1 |
tacaagatagaattgtatatgttaatttgtttccttccaaaaaa-ttaatttacaagataagacttaatttgttgaccaaacaacataaacttcaaaagt |
99 |
Q |
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| T |
7226708 |
tacaagatagaattgtatatgttaatttgtttccttccaaaaaaattaatttacaagataagacttaatttgttgaccaaacaacataaacttcaaaagt |
7226609 |
T |
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| Q |
100 |
taatagtattattattaacattataaatttgttactatttgatattgatttttcactttaacagtttaggaaagaacattgattcattttttctatcata |
199 |
Q |
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| T |
7226608 |
taatagtattattattaacacta--aatttgttactatttgatattgatttttcactttaacactttaggagagaaaattgattcatcttttctatcata |
7226511 |
T |
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| Q |
200 |
ttatttgttgtttaaaatattaataacactgtaaatttgaatgagtcgtataactataagaatgagaagttttcaataggtcatatatttttgttttgag |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
7226510 |
ttatttgttgtttaaaatattaataacactgtaaatttgaatgagtcgtataactataagaatgagaagttttcagtaggtcatatatttttgttttgag |
7226411 |
T |
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| Q |
300 |
gcaataggtcatatatttagagacatggttagtagaaaacaacattatgaaaaatatgtataatgctttctg |
371 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7226410 |
gcaataggtcatatatttagagacatggttagtagaaaacaacattatgaaaaatatgtataatgctttctg |
7226339 |
T |
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