View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4912_low_1 (Length: 406)
Name: NF4912_low_1
Description: NF4912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4912_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 250; Significance: 1e-139; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 19 - 396
Target Start/End: Complemental strand, 29598026 - 29597649
Alignment:
| Q |
19 |
accttgcaggccaggcaagctcactttttccttcgggtatgataattcaactagaacttataatgttgtggttttgtgttctagtgaggtgaaagttttc |
118 |
Q |
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||||||||| ||||||||||| |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |
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| T |
29598026 |
accttgcagaccaggcaagctaactttttccttcgggtatgatatttcaactagaacttataatgctgtggttttgtgttctagggaggtgaaagttttc |
29597927 |
T |
|
| Q |
119 |
ggattcaatgataatatttggagaaaaattgcaagttttactccttataaccttgttgacactcttggctatagttatgtgaaccaaggagtgcatttga |
218 |
Q |
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| ||| ||||||||||||||||||||||| |||||||||||||||||||||| |||| || ||||||| ||||||||||||||||||||||||||||| |
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| T |
29597926 |
cgtttcggtgataatatttggagaaaaattgtaagttttactccttataaccttcttgatacccttggctgtagttatgtgaaccaaggagtgcatttga |
29597827 |
T |
|
| Q |
219 |
gtggcactattagctggatttccttttatccaaaggatgttactgttgagaaatttgtgattatctcgcttgatcttgctactgagacatacaagaaatc |
318 |
Q |
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|||||||| ||| |||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
29597826 |
gtggcactgttaactggatatccatttatctgaaggatgttactgttgagaaatttgtgattatctcgcttgatcttgctactgagacatacaggaaatt |
29597727 |
T |
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| Q |
319 |
gctaccccctcctggagcagttaattcagtgtcaccatatattgaaccaattattgctgttttgatggtccgcctttg |
396 |
Q |
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| | ||||||||||| || ||||||| |||||||| ||||| |||||||| ||||||||||||| ||| ||||||||| |
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| T |
29597726 |
gttgccccctcctggtgctgttaatttagtgtcacgatatactgaaccaactattgctgttttgctggaccgcctttg |
29597649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 19 - 386
Target Start/End: Original strand, 29647270 - 29647639
Alignment:
| Q |
19 |
accttgcaggccaggcaagctcactttttccttcgggtatgataattcaactagaacttataatgttgtggttttgtgttctagtgaggtgaaagttttc |
118 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
29647270 |
accttgcagaccaggcaagctcactttttccttcgggtatgataattcaactagaacttataatgccgtggttttgtgttctagtgaggtgaaagttttc |
29647369 |
T |
|
| Q |
119 |
ggattcaatgataatatttggagaaaaattgcaagttttactccttataaccttgttgacactcttggctatagttatgtgaac---caaggagtgcatt |
215 |
Q |
| |
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| ||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||| ||||| ||||||| ||||||||| ||| |
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| T |
29647370 |
cgtttcggtgataatatttggagaaaaattgcaag-tttactccttataaccttgttgatacccttggccatagtgttgtgaaccaacaaggagtgtatt |
29647468 |
T |
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| Q |
216 |
tgagtggcactattagctggatttccttttatccaaaggatgttactgttgagaaatttgtgattatctcgcttgatcttgctactgagacatacaagaa |
315 |
Q |
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||||||||||| ||| ||||||||| ||||||| ||||||||||| |||| ||||||| |||||||||||||||| ||| ||| |||||||||||||| |
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| T |
29647469 |
tgagtggcactgttaattggatttccatttatccggaggatgttactcttgataaatttgcgattatctcgcttgatattggtaccgagacatacaagaa |
29647568 |
T |
|
| Q |
316 |
atcgctaccccctcctggagcagttaattcagtgtcaccatatattgaaccaattattgctgttttgatgg |
386 |
Q |
| |
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| |||||||||||||||||||||||||| |||| |||||||||||||||||| ||||||| |||||||| |
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| T |
29647569 |
actgctaccccctcctggagcagttaatttagtgccaccatatattgaaccaactattgctactttgatgg |
29647639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 34 - 376
Target Start/End: Original strand, 29641967 - 29642312
Alignment:
| Q |
34 |
caagctcactttttccttcgggtatgataattcaactagaacttataatgttgtggttttgtgttctagtgaggtgaaagttttcggattcaatgataat |
133 |
Q |
| |
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|||||||| |||||| |||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| ||| ||||||| |
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| T |
29641967 |
caagctcagtttttcattcgggtatgataattcaactagaacttataatgcggtggttttgtgtactagtgaggtgaaagttttccatttcggtgataat |
29642066 |
T |
|
| Q |
134 |
atttggagaaaaattgcaagttttactccttataaccttgttgacactcttggctatagttatgtgaac---caaggagtgcatttgagtggcactatta |
230 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||| || |||||| || | ||||||| ||||||||| |||||||||||||| ||| |
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| T |
29642067 |
atttggagaaaaattgcaaattttactccttataaccttgttgatacccttggccatgatggtgtgaaccaacaaggagtgtatttgagtggcactgtta |
29642166 |
T |
|
| Q |
231 |
gctggatttccttttatccaaaggatgttactgttgagaaatttgtgattatctcgcttgatcttgctactgagacatacaagaaatcgctaccccctcc |
330 |
Q |
| |
|
||||||||| ||||||| ||||||||||| |||| ||||||| |||||||||||||||||||| ||| ||||||||||||||| |||||||||||| |
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| T |
29642167 |
attggatttccatttatccggaggatgttactcttgataaatttgcgattatctcgcttgatcttggtaccgagacatacaagaaactgctaccccctcc |
29642266 |
T |
|
| Q |
331 |
tggagcagttaattcagtgtcaccatatattgaaccaattattgct |
376 |
Q |
| |
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|||||||||||||| |||| ||||||||| |||||||| ||||||| |
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| T |
29642267 |
tggagcagttaatttagtgccaccatatactgaaccaactattgct |
29642312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 67; Significance: 1e-29; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 53 - 225
Target Start/End: Complemental strand, 19326431 - 19326262
Alignment:
| Q |
53 |
gggtatgataattcaactagaacttataatgttgtggttttgtgttctagtgaggtgaaagttttcggattcaatgataatatttggagaaaaattgcaa |
152 |
Q |
| |
|
|||||||||||||||||| |||||||||| || ||| | ||| ||||||||||||||||||||||| | || | |||||||||||||||||||||| ||| |
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| T |
19326431 |
gggtatgataattcaactggaacttataaggtggtgctcttgagttctagtgaggtgaaagttttcagtttgagtgataatatttggagaaaaatttcaa |
19326332 |
T |
|
| Q |
153 |
gttttactccttataaccttgttgacactcttggctatagttatgtgaaccaaggagtgcatttgagtggcac |
225 |
Q |
| |
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| ||| |||||| | ||| || || |||||||||| |||| | |||| |||||||| ||||||||||||| |
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| T |
19326331 |
gctttcctccttttgaccatgctgttactcttggctttagtaa---gaacgaaggagtgtatttgagtggcac |
19326262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 251 - 313
Target Start/End: Complemental strand, 19344811 - 19344749
Alignment:
| Q |
251 |
aaggatgttactgttgagaaatttgtgattatctcgcttgatcttgctactgagacatacaag |
313 |
Q |
| |
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|||||| ||||||||| |||||||||||||||||| |||||||||| ||| |||||||||||| |
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| T |
19344811 |
aaggatattactgttgggaaatttgtgattatctcccttgatcttggtaccgagacatacaag |
19344749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 258 - 313
Target Start/End: Original strand, 19374608 - 19374663
Alignment:
| Q |
258 |
ttactgttgagaaatttgtgattatctcgcttgatcttgctactgagacatacaag |
313 |
Q |
| |
|
||||||||| |||||||||||||||||| |||||||||| ||| |||||||||||| |
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|
| T |
19374608 |
ttactgttgggaaatttgtgattatctcccttgatcttggtaccgagacatacaag |
19374663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 251 - 313
Target Start/End: Complemental strand, 19326221 - 19326159
Alignment:
| Q |
251 |
aaggatgttactgttgagaaatttgtgattatctcgcttgatcttgctactgagacatacaag |
313 |
Q |
| |
|
|||||| |||| || ||| ||||| |||||||||| |||||||||| |||||||||||||||| |
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| T |
19326221 |
aaggatattaccgtcgagcaatttatgattatctcccttgatcttggtactgagacatacaag |
19326159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 262 - 313
Target Start/End: Original strand, 26256620 - 26256671
Alignment:
| Q |
262 |
tgttgagaaatttgtgattatctcgcttgatcttgctactgagacatacaag |
313 |
Q |
| |
|
||||||| ||||||||||||| |||||||||||| | || |||||||||||| |
|
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| T |
26256620 |
tgttgagcaatttgtgattatttcgcttgatctttcaacggagacatacaag |
26256671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 53 - 164
Target Start/End: Complemental strand, 24254881 - 24254770
Alignment:
| Q |
53 |
gggtatgataattcaactagaacttataatgttgtggttttgtgttctagtgaggtgaaagttttcggattcaatgataatatttggagaaaaattgcaa |
152 |
Q |
| |
|
|||||||||||||||||| |||||||||| || ||| | | |||| |||| | ||||||||||| | || || ||||||||||||||||||||| ||| |
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| T |
24254881 |
gggtatgataattcaactggaacttataaggtggtgttcatatgttatagtaaactgaaagttttcagtttgaaggataatatttggagaaaaatttcaa |
24254782 |
T |
|
| Q |
153 |
gttttactcctt |
164 |
Q |
| |
|
| ||| |||||| |
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| T |
24254781 |
ggtttcctcctt |
24254770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 251 - 313
Target Start/End: Complemental strand, 24254662 - 24254600
Alignment:
| Q |
251 |
aaggatgttactgttgagaaatttgtgattatctcgcttgatcttgctactgagacatacaag |
313 |
Q |
| |
|
|||||| |||| |||||| |||| |||||||||| |||||||||| |||||||||||||||| |
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|
| T |
24254662 |
aaggatattaccgttgagcaattcatgattatctcccttgatcttggtactgagacatacaag |
24254600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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