View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4913-Insertion-1 (Length: 1060)
Name: NF4913-Insertion-1
Description: NF4913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4913-Insertion-1 |
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Alignment Details
Target: chr6 (Bit Score: 112; Significance: 4e-56; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 504 - 717
Target Start/End: Complemental strand, 31381864 - 31381654
Alignment:
| Q |
504 |
ttagttttggtgcctcttttctt-gctcttaatagttgaactcttgagttgaaaagcaacatattttgatcttttcacaaaggcatcttagactcaatga |
602 |
Q |
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| T |
31381864 |
ttagttttggtgcctcttttttttgctcttaaaagttgaactcttaagttgaaaagctacatgtttttatctttccac----gcatcttagactcagaga |
31381769 |
T |
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| Q |
603 |
ttatttaggataaggtttgaatggtataattcaattggtcatatccctaaaagtttatctcttaatctatt---tgagcatttacattctgaagacctta |
699 |
Q |
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| T |
31381768 |
atatttaggataaggtttgaatggtataattcaattgatcat--ccctaaaagtt-atctcttaatctattatttgagcatttacattctgaagacctta |
31381672 |
T |
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| Q |
700 |
atcaagcaacaccaaatt |
717 |
Q |
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| T |
31381671 |
atcaaacaacaccaaatt |
31381654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 145 - 232
Target Start/End: Complemental strand, 31397703 - 31397616
Alignment:
| Q |
145 |
ccaattagaatttgcttcttttaaatattgaattcaactatatttctaagatacatgtgtctcaatcgaattccaaatttgaagatta |
232 |
Q |
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| T |
31397703 |
ccaactagaatttgcttcttttaactattgatttcaactatatttctaagacacatgtgtctcaatcaaattccaaacttgaagatta |
31397616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 596 - 717
Target Start/End: Complemental strand, 31396884 - 31396772
Alignment:
| Q |
596 |
tcaatgattatttaggataaggtttgaatggtataattcaattggtcatatccctaaaagtttatctcttaatctatttgagcatttacattctgaagac |
695 |
Q |
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| T |
31396884 |
tcaatgattatttaggacaagctttgaatggtataactcaatt---------ccaaaaagtttatctcttaatctattcgagcatttacattctgaagag |
31396794 |
T |
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| Q |
696 |
cttaatcaagcaacaccaaatt |
717 |
Q |
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| T |
31396793 |
cttaatcaaacaattccaaatt |
31396772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 504 - 564
Target Start/End: Complemental strand, 31396948 - 31396888
Alignment:
| Q |
504 |
ttagttttggtgcctcttttcttgctcttaatagttgaactcttgagttgaaaagcaacat |
564 |
Q |
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| T |
31396948 |
ttagttttggtgcctcttttcttgctcttaaaagttaaactcttaagttgaaaagctacat |
31396888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 591 - 667
Target Start/End: Complemental strand, 20997990 - 20997916
Alignment:
| Q |
591 |
tagactcaatgattatttaggataaggtttgaatggtataattcaattggtcatatccctaaaagtttatctcttaa |
667 |
Q |
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| T |
20997990 |
tagacacaatgatcatataggacaaggtttgaatggtagaattcaattggtc--atccctaaaagttcatctcttaa |
20997916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 10 - 117
Target Start/End: Complemental strand, 31381838 - 31381738
Alignment:
| Q |
10 |
tcttaaaagttgaactcttaataagttgaaaagctatgtattttgatctttccacaaaggcatcttagactcaatgattatttaggaaataatttgaatg |
109 |
Q |
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| T |
31381838 |
tcttaaaagttgaactcttaa---gttgaaaagctacatgtttttatctttccac----gcatcttagactcagagaatatttaggataaggtttgaatg |
31381746 |
T |
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| Q |
110 |
gtataatt |
117 |
Q |
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| T |
31381745 |
gtataatt |
31381738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 192
Target Start/End: Complemental strand, 31997256 - 31997217
Alignment:
| Q |
153 |
aatttgcttcttttaaatattgaattcaactatatttcta |
192 |
Q |
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| T |
31997256 |
aattcgcttcttttaattattgaattcaactatatttcta |
31997217 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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