View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4913-Insertion-2 (Length: 877)
Name: NF4913-Insertion-2
Description: NF4913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4913-Insertion-2 |
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Alignment Details
Target: chr6 (Bit Score: 694; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 694; E-Value: 0
Query Start/End: Original strand, 16 - 861
Target Start/End: Original strand, 33337593 - 33338441
Alignment:
| Q |
16 |
gaagaacataggagaaatgaaaccaatttagatcattgaaaaattcacatgattagccgttacttttttcccacaacctcatgcacataaaagagagtca |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
33337593 |
gaagaacataggagaaatgaaaccaatttagatcattgaaaaattcacatgattagccgttacttttttcccacaacctcctgcacataaaagagagtca |
33337692 |
T |
|
| Q |
116 |
aagtgtaaaatttcatgttggaccaagttgtccttagttgaaactctattgtttggaagtcgccatgcaa-catagaagtcttcaaccgatcaatgcgag |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
33337693 |
aagtgtaaaatttcatgttggaccaagttgtccttagttgaaactctattgtttggaagtcgccatgcaaacatagaagtcttcaaccgatcaatgcgag |
33337792 |
T |
|
| Q |
215 |
agtatgataaattttgagcgggtattaatagtgtaagaaaattatacttgtttaatttgtatcaca-acgttgtaaaacttttttacatatgcaccaaat |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
33337793 |
agtatgataaattttgagcgggtattaatagtgtaagaaaattatacttgtttaatttgtatcacagacgttgtaaaacttttttacatatgcaccaaat |
33337892 |
T |
|
| Q |
314 |
caaattattttacaacaccacatttttaacttagttcataaaatatctctttaaatatcnnnnnnnn-agggagtctctacaaatatctttttcctttga |
412 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
33337893 |
caaattattttacaacaccacatttttaacttagttcataaaatatctctttaaatatctttttttttagggagtctctacaaatatctttttcctttga |
33337992 |
T |
|
| Q |
413 |
cttgattgactagatgtgtnnnnnnnnttcatagaaattaaccacttattaaatatttgttgaagtttatagaaagtaaacaatttaggctcttggacat |
512 |
Q |
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| T |
33337993 |
tttgattgaatagatgtgtaaaaaaaattcatagaaattaaccacttattaaatatttgttgaagtttatagaaagtaaacaatttaggctcttggacat |
33338092 |
T |
|
| Q |
513 |
attttgcacgattggcttgttttaaagggnnnnnnnttagcttatgtcagcaatttcttgatatagtatcctataaaa-caagcattttcttgatagtgt |
611 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| |
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| T |
33338093 |
attttgcacgattggcttgttttaaagggaaaaaaattagcttatgtcagcaatttcttgatattatatcctataaaaacaagcattttcttgatagtgc |
33338192 |
T |
|
| Q |
612 |
accttaatatattttaacaagtgcttgtcaacgtgatgggatcaattttaacacattatatgtgatttataataaaaaa-ctagttttttaatagttttt |
710 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
33338193 |
accttaatatattttaacaagtgcttggcaacgtgatgggatcaattttaacacattatatgtgatttataataaaaaaactagttttttaatagtttt- |
33338291 |
T |
|
| Q |
711 |
atatattgtctctgatgtggagttcagtaacaagagtttgagatttgcaatctaacaaacaaagttcaaatccctttaaagatgccatacaaagttcaac |
810 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
33338292 |
atatattgtctctgatgtggagttcagtaacaagagtttgagatt-gcaatctaacaaacaaagttcaaatccctttaaagatgctatacaaagttcaac |
33338390 |
T |
|
| Q |
811 |
tccccaattttctcaaaattaataattaactatacattcaacttcttgttc |
861 |
Q |
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| T |
33338391 |
tccccaattttctcaaaattaataattaactatacattcaacttcttgttc |
33338441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 116; E-Value: 2e-58
Query Start/End: Original strand, 12 - 278
Target Start/End: Complemental strand, 35128608 - 35128347
Alignment:
| Q |
12 |
taatgaagaacataggagaaatgaaaccaatttagatcattgaaaaattcacatgattagccgttacttttttcccacaacctcatgcacataaaagaga |
111 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| | |||| ||||||||||| ||||||||||||||| |
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| T |
35128608 |
taatgaagaacataggagaaatgaaaccaatttagatcattgaaaaattcacataattaaccgtttcattttccccacaacctcttgcacataaaagaga |
35128509 |
T |
|
| Q |
112 |
gtcaaagtgtaaaatttcatgttggaccaagttgtccttagttgaaactctattgtttggaagtcgccatgc-aacatagaagtcttcaaccgatca--- |
207 |
Q |
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| |||||||||||||| ||||||||||||| |||||||| ||||||| | ||| |||||| ||| | |||| ||||| |||| || ||||| |
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| T |
35128508 |
gccaaagtgtaaaattccatgttggaccaaattgtcctttgttgaaa------tttttagaagtcaccacacaaacacagaagccttcgacggatcatgc |
35128415 |
T |
|
| Q |
208 |
atgcgagagtatgataaattttgagcgggtattaatagtgtaagaaaattatacttgtttaatttgtatca |
278 |
Q |
| |
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|||| ||||||||||||| ||| |||| |||| |||||||||||||||||||| ||||||||||||||| |
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| T |
35128414 |
atgcaagagtatgataaactttcagcgtgtat---tagtgtaagaaaattatactggtttaatttgtatca |
35128347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 587 - 793
Target Start/End: Complemental strand, 35127915 - 35127704
Alignment:
| Q |
587 |
aaaacaagcattttcttgatagtgtaccttaatatattttaacaagtgcttgtcaacgtgatgggatcaattttaacacattatatgtgatttataataa |
686 |
Q |
| |
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|||||||| | |||||||||||| ||| ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |
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| T |
35127915 |
aaaacaagaaatttcttgatagtacacccaaatatattttaactagtgcttgtcaacgtgatggcatcaattttaacacattatatgtgattgataataa |
35127816 |
T |
|
| Q |
687 |
aaaac---tagttt--tttaatagtttttatatattgtctctgatgtggagttcagtaa-caagagtttgagatttgcaatctaa-caaacaaagttcaa |
779 |
Q |
| |
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|||| |||||| |||||||||||| |||| |||||| ||| |||||||||||||| ||||||||||||||| ||||||||| |||||||||||||| |
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| T |
35127815 |
aaaaaaattagtttgttttaatagtttt-atatcttgtctgtgaggtggagttcagtaaacaagagtttgagatt-gcaatctaaacaaacaaagttcaa |
35127718 |
T |
|
| Q |
780 |
atccctttaaagat |
793 |
Q |
| |
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|||| |||||||| |
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| T |
35127717 |
atccaattaaagat |
35127704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 463 - 541
Target Start/End: Complemental strand, 35128226 - 35128148
Alignment:
| Q |
463 |
aaatatttgttgaagtttatagaaagtaaacaatttaggctcttggacatattttgcacgattggcttgttttaaaggg |
541 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||| |||||||| |||||||||||| ||| | ||||||||||||| |
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| T |
35128226 |
aaatatttgttgaagtttatagtaagtaaacaatttcggctcttgaacatattttgcatgatgtggttgttttaaaggg |
35128148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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