View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4913-Insertion-6 (Length: 325)

Name: NF4913-Insertion-6
Description: NF4913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4913-Insertion-6
NF4913-Insertion-6
[»] chr3 (14 HSPs)
chr3 (51-325)||(9369510-9369784)
chr3 (51-325)||(9347868-9348130)
chr3 (53-241)||(9340624-9340812)
chr3 (53-228)||(9613931-9614103)
chr3 (93-229)||(9352866-9353002)
chr3 (93-229)||(9377051-9377187)
chr3 (96-231)||(9617481-9617616)
chr3 (160-228)||(9494890-9494958)
chr3 (96-142)||(9646382-9646428)
chr3 (96-142)||(9655375-9655421)
chr3 (93-142)||(9695631-9695680)
chr3 (93-140)||(9485984-9486031)
chr3 (96-142)||(9626498-9626544)
chr3 (163-224)||(9343815-9343876)
[»] chr6 (5 HSPs)
chr6 (96-142)||(7029865-7029911)
chr6 (96-142)||(7025808-7025854)
chr6 (96-142)||(7041548-7041594)
chr6 (96-125)||(7012889-7012918)
chr6 (96-140)||(7046893-7046937)
[»] chr2 (1 HSPs)
chr2 (160-229)||(20694383-20694452)
[»] chr1 (2 HSPs)
chr1 (160-228)||(4439826-4439894)
chr1 (101-141)||(8814385-8814425)
[»] chr7 (1 HSPs)
chr7 (93-132)||(450126-450165)
[»] chr5 (1 HSPs)
chr5 (93-140)||(18571165-18571212)


Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 51 - 325
Target Start/End: Complemental strand, 9369784 - 9369510
Alignment:
Q  51 aacttgatgagaaggagaagaagtgggtgaggttgatggattttgatgagaaggagaagaagtgggtgaagttgaggaatttcggggataggannnnnnn 150  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||           
T  9369784 aacttgatgagaaggagaagaagtggatgaggttgatggattttgatgagaaggagaagaagtgggtgaagttgaggcattttggggataggattttttt 9369685  T
Q  151 cattgggcgtggatgttcgttttctgcttctgcttcagatctatgcattccgaaaggaaattgtgtcgtctttattgacgaatccgtcctcggtattggc 250  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| |    
T  9369684 cattgggcgtggatgttcgttttctgcttctgcttcagatctatgtattccgaaaggaaattgtgtcgtctttattgacgaatccgtcctctgtattgac 9369585  T
Q  251 gatatgtttcgtcgaaaacgtgtttttcacttggatcaaaatcaactttcgtgtggggctaaatatcttaacttg 325  Q
     ||||||||| ||  |||||||| ||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  9369584 aatatgtttcatcagaaacgtgtatttcacttggatcaaaatcaactttcaggtggggctaaatatcttaacttg 9369510  T

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Target: chr3; HSP #2
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 51 - 325
Target Start/End: Complemental strand, 9348130 - 9347868
Alignment:
Q  51 aacttgatgagaaggagaagaagtgggtgaggttgatggattttgatgagaaggagaagaagtgggtgaagttgaggaatttcggggataggannnnnnn 150  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||           
T  9348130 aacttgatgagaaggagaagaagtgggtgaggttgatggattttgatgagaaggagaagaagtgggtgaagttgaggcattttggggataggattttttt 9348031  T
Q  151 cattgggcgtggatgttcgttttctgcttctgcttcagatctatgcattccgaaaggaaattgtgtcgtctttattgacgaatccgtcctcggtattggc 250  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| | |||| |    
T  9348030 cattgggcgtggatgttcgttttctgcttctgcttcagatctatgtattccgaaaggaaattgtgtcgtctttattgacgaaaccgtcctctggattgac 9347931  T
Q  251 gatatgtttcgtcgaaaacgtgtttttcacttggatcaaaatcaactttcgtgtggggctaaatatcttaacttg 325  Q
     ||            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9347930 aat------------aaacgtgtttttcacttggatcaaaatcaactttcgtgtggggctaaatatcttaacttg 9347868  T

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Target: chr3; HSP #3
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 53 - 241
Target Start/End: Complemental strand, 9340812 - 9340624
Alignment:
Q  53 cttgatgagaaggagaagaagtgggtgaggttgatggattttgatgagaaggagaagaagtgggtgaagttgaggaatttcggggataggannnnnnnca 152  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||    
T  9340812 cttgatgagaagaagaagaagtgggtgaggttgatggattttgatgagaaggagaagaagtgggtgaagttgaggaatttcggggatagggtttttttca 9340713  T
Q  153 ttgggcgtggatgttcgttttctgcttctgcttcagatctatgcattccgaaaggaaattgtgtcgtctttattgacgaatccgtcctc 241  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||  |||||||||||||   |||| ||||||||||| ||||||    
T  9340712 ttgggcgtggatgttcgttttctgcttctgcttcagatctatgtattcaaaaaggaaattgtgcaatcttcattgacgaatctgtcctc 9340624  T

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Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 53 - 228
Target Start/End: Original strand, 9613931 - 9614103
Alignment:
Q  53 cttgatgagaaggagaagaagtgggtgaggttgatggattttgatgagaaggagaagaagtgggtgaagttgaggaatttcggggataggannnnnnnca 152  Q
    |||||||||||||||||||||||||||| ||||||||||| |||| |||||    |||||||   |||||||| |||||| ||||||| |        |     
T  9613931 cttgatgagaaggagaagaagtgggtgaagttgatggattatgataagaagttagagaagtg---gaagttgaagaattttggggatatggtttttttct 9614027  T
Q  153 ttgggcgtggatgttcgttttctgcttctgcttcagatctatgcattccgaaaggaaattgtgtcgtctttattga 228  Q
    | ||| |||||||||| ||||||||||||||||||||||| ||  || | ||||||||||||||  ||||||||||    
T  9614028 tggggagtggatgttcattttctgcttctgcttcagatctgtgtcttaccaaaggaaattgtgttatctttattga 9614103  T

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Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 93 - 229
Target Start/End: Complemental strand, 9353002 - 9352866
Alignment:
Q  93 ttgatgagaaggagaagaagtgggtgaagttgaggaatttcggggataggannnnnnncattgggcgtggatgttcgttttctgcttctgcttcagatct 192  Q
    ||||||||| |||||||||||||||||||||||  || || |||| ||||          | ||| |||||||||||||||||||||||| ||  |||||    
T  9353002 ttgatgagatggagaagaagtgggtgaagttgaaaaaattagggggtagggttttgtttgtggggagtggatgttcgttttctgcttctggttgggatct 9352903  T
Q  193 atgcattccgaaaggaaattgtgtcgtctttattgac 229  Q
     ||  |||| ||||||||||||||| |||||||||||    
T  9352902 gtgtcttcccaaaggaaattgtgtcatctttattgac 9352866  T

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Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 93 - 229
Target Start/End: Complemental strand, 9377187 - 9377051
Alignment:
Q  93 ttgatgagaaggagaagaagtgggtgaagttgaggaatttcggggataggannnnnnncattgggcgtggatgttcgttttctgcttctgcttcagatct 192  Q
    ||||||||||   ||||||||||| |||||||| ||| || ||||||||||         | ||| |||||||||||||| ||||||||||||  |||||    
T  9377187 ttgatgagaacaggaagaagtgggagaagttgaagaaattaggggataggattttgtttgtggggagtggatgttcgtttcctgcttctgcttgggatct 9377088  T
Q  193 atgcattccgaaaggaaattgtgtcgtctttattgac 229  Q
     ||  |||| ||||||||||||||| |||||||||||    
T  9377087 gtgtcttcccaaaggaaattgtgtcatctttattgac 9377051  T

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Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 96 - 231
Target Start/End: Original strand, 9617481 - 9617616
Alignment:
Q  96 atgagaaggagaagaagtgggtgaagttgaggaatttcggggataggannnnnnncattgggcgtggatgttcgttttctgcttctgcttcagatctatg 195  Q
    ||||||| |||||||| |||||||||||||  ||||| |||||||||        | ||| |  ||||||||| ||||||||||||||||||||| | ||    
T  9617481 atgagaaagagaagaaatgggtgaagttgaaaaatttaggggatagggttttgttccttgtgaatggatgttcattttctgcttctgcttcagatttgtg 9617580  T
Q  196 cattccgaaaggaaattgtgtcgtctttattgacga 231  Q
      || | ||||| ||||||||| |||||||||||||    
T  9617581 tgtttccaaagggaattgtgtcatctttattgacga 9617616  T

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Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 160 - 228
Target Start/End: Original strand, 9494890 - 9494958
Alignment:
Q  160 tggatgttcgttttctgcttctgcttcagatctatgcattccgaaaggaaattgtgtcgtctttattga 228  Q
    ||||||||||||||||||||||||||| ||| | ||| || | ||||| ||||||||| ||||||||||    
T  9494890 tggatgttcgttttctgcttctgcttctgatttgtgcgtttccaaagggaattgtgtcatctttattga 9494958  T

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Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 96 - 142
Target Start/End: Original strand, 9646382 - 9646428
Alignment:
Q  96 atgagaaggagaagaagtgggtgaagttgaggaatttcggggatagg 142  Q
    |||||||||||||||| ||||||||||||| |||||| |||||||||    
T  9646382 atgagaaggagaagaaatgggtgaagttgatgaatttaggggatagg 9646428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 96 - 142
Target Start/End: Original strand, 9655375 - 9655421
Alignment:
Q  96 atgagaaggagaagaagtgggtgaagttgaggaatttcggggatagg 142  Q
    |||||||||||||||| ||||||||||||| |||||| |||||||||    
T  9655375 atgagaaggagaagaaatgggtgaagttgatgaatttaggggatagg 9655421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 93 - 142
Target Start/End: Original strand, 9695631 - 9695680
Alignment:
Q  93 ttgatgagaaggagaagaagtgggtgaagttgaggaatttcggggatagg 142  Q
    ||||||||||||||||||||||||| |||||||  ||||| |||||||||    
T  9695631 ttgatgagaaggagaagaagtgggtcaagttgaccaatttaggggatagg 9695680  T

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Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 93 - 140
Target Start/End: Original strand, 9485984 - 9486031
Alignment:
Q  93 ttgatgagaaggagaagaagtgggtgaagttgaggaatttcggggata 140  Q
    |||||||||||||||||||||||||| || |||| ||||| |||||||    
T  9485984 ttgatgagaaggagaagaagtgggtggaggtgagaaatttgggggata 9486031  T

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Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 142
Target Start/End: Original strand, 9626498 - 9626544
Alignment:
Q  96 atgagaaggagaagaagtgggtgaagttgaggaatttcggggatagg 142  Q
    |||||||||||||||| |||||||| |||| |||||| |||||||||    
T  9626498 atgagaaggagaagaaatgggtgaatttgatgaatttaggggatagg 9626544  T

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Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 224
Target Start/End: Complemental strand, 9343876 - 9343815
Alignment:
Q  163 atgttcgttttctgcttctgcttcagatctatgcattccgaaaggaaattgtgtcgtcttta 224  Q
    |||||||||||||||||||||||| ||| | ||  |||| | |||||||||||| |||||||    
T  9343876 atgttcgttttctgcttctgcttcggatttgtgtgttcctagaggaaattgtgttgtcttta 9343815  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 96 - 142
Target Start/End: Complemental strand, 7029911 - 7029865
Alignment:
Q  96 atgagaaggagaagaagtgggtgaagttgaggaatttcggggatagg 142  Q
    |||||||||||||||||||||||||||||| || |||||||||||||    
T  7029911 atgagaaggagaagaagtgggtgaagttgacgagtttcggggatagg 7029865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 142
Target Start/End: Complemental strand, 7025854 - 7025808
Alignment:
Q  96 atgagaaggagaagaagtgggtgaagttgaggaatttcggggatagg 142  Q
    |||||||||||||||||||||||||||||| || ||| || ||||||    
T  7025854 atgagaaggagaagaagtgggtgaagttgacgagtttaggagatagg 7025808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 142
Target Start/End: Complemental strand, 7041594 - 7041548
Alignment:
Q  96 atgagaaggagaagaagtgggtgaagttgaggaatttcggggatagg 142  Q
    ||||||||||||||||||||||||||||||  | ||| |||||||||    
T  7041594 atgagaaggagaagaagtgggtgaagttgactagtttaggggatagg 7041548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 125
Target Start/End: Complemental strand, 7012918 - 7012889
Alignment:
Q  96 atgagaaggagaagaagtgggtgaagttga 125  Q
    ||||||||||||||||||||||||||||||    
T  7012918 atgagaaggagaagaagtgggtgaagttga 7012889  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 140
Target Start/End: Complemental strand, 7046937 - 7046893
Alignment:
Q  96 atgagaaggagaagaagtgggtgaagttgaggaatttcggggata 140  Q
    |||||||||||||||||||||||||||| | || ||| |||||||    
T  7046937 atgagaaggagaagaagtgggtgaagttaacgagtttaggggata 7046893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 160 - 229
Target Start/End: Original strand, 20694383 - 20694452
Alignment:
Q  160 tggatgttcgttttctgcttctgcttcagatctatgcattccgaaaggaaattgtgtcgtctttattgac 229  Q
    ||||||||||||||||||||||||||| ||| | ||  || | ||||| ||||||||| |||||||||||    
T  20694383 tggatgttcgttttctgcttctgcttcggatttgtgtgttgccaaagggaattgtgtcatctttattgac 20694452  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 228
Target Start/End: Complemental strand, 4439894 - 4439826
Alignment:
Q  160 tggatgttcgttttctgcttctgcttcagatctatgcattccgaaaggaaattgtgtcgtctttattga 228  Q
    ||||||||||||||||||||||||||| ||| | ||  || | ||||| ||||||||| ||||||||||    
T  4439894 tggatgttcgttttctgcttctgcttcggatttgtgtgtttctaaagggaattgtgtcatctttattga 4439826  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 101 - 141
Target Start/End: Original strand, 8814385 - 8814425
Alignment:
Q  101 aaggagaagaagtgggtgaagttgaggaatttcggggatag 141  Q
    ||||||||||||||||||||||||  |||||| ||||||||    
T  8814385 aaggagaagaagtgggtgaagttggcgaatttaggggatag 8814425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 93 - 132
Target Start/End: Original strand, 450126 - 450165
Alignment:
Q  93 ttgatgagaaggagaagaagtgggtgaagttgaggaattt 132  Q
    |||||||||||||||| |||||||| ||||||||||||||    
T  450126 ttgatgagaaggagaaaaagtgggtcaagttgaggaattt 450165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 93 - 140
Target Start/End: Complemental strand, 18571212 - 18571165
Alignment:
Q  93 ttgatgagaaggagaagaagtgggtgaagttgaggaatttcggggata 140  Q
    |||||||||||||||||||||||||||| |||| || ||| |||||||    
T  18571212 ttgatgagaaggagaagaagtgggtgaaattgacgagtttaggggata 18571165  T

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