View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4913-Insertion-8 (Length: 314)
Name: NF4913-Insertion-8
Description: NF4913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4913-Insertion-8 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 8 - 314
Target Start/End: Complemental strand, 31067015 - 31066708
Alignment:
| Q |
8 |
taaagaagttaaggtaaagtgttattatttcttagcctcctttactccacatctctctcagcattttctttttcctcaagaactttatgctaaaaacaca |
107 |
Q |
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| T |
31067015 |
taaagaagttaaggtaaagtgttattatttcttagcctcctttactccacatctctctcagccttttctttttcctcaagaactttatgctaaaaacaca |
31066916 |
T |
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| Q |
108 |
gatgatacaccatacgtaaaatttgtctaaatctaggcttactgtttgacctcagacttatttctatatatcaaaaatgacaatgctcaaccaagtgagt |
207 |
Q |
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| T |
31066915 |
ggtgatacaccatacgtaaaattcgtctaaatctaggcttactgtttgacctcagacttatttctatatatcaaaaatgacaatgctcaaccaagtgagt |
31066816 |
T |
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| Q |
208 |
tgttaattgttgagatgagttgtgaattgttatgttagta-nnnnnnnncccttgtcagaaatcgaacattggactttttaacttattaacttctttgat |
306 |
Q |
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| T |
31066815 |
tgttaattgttgagatgagttgtgaattgttatgttagtatttttttttcccttgtcagaaatcgaacattggactttttaacttattaacttctttgat |
31066716 |
T |
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| Q |
307 |
cccttagc |
314 |
Q |
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|||||||| |
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| T |
31066715 |
cccttagc |
31066708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 41
Target Start/End: Complemental strand, 31074253 - 31074220
Alignment:
| Q |
8 |
taaagaagttaaggtaaagtgttattatttctta |
41 |
Q |
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|||||||||||||||||||||||| ||||||||| |
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| T |
31074253 |
taaagaagttaaggtaaagtgttactatttctta |
31074220 |
T |
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