View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4913_high_8 (Length: 239)

Name: NF4913_high_8
Description: NF4913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4913_high_8
NF4913_high_8
[»] chr6 (3 HSPs)
chr6 (18-229)||(32600911-32601133)
chr6 (118-229)||(32590551-32590662)
chr6 (139-193)||(24883380-24883434)
[»] chr1 (2 HSPs)
chr1 (137-229)||(34594089-34594181)
chr1 (139-226)||(34578391-34578478)


Alignment Details
Target: chr6 (Bit Score: 123; Significance: 3e-63; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 18 - 229
Target Start/End: Original strand, 32600911 - 32601133
Alignment:
Q  18 ataatataagaaaatgaagaaaataattgannnnnnnnactattccagttataatattaagtttactcgaagaaaatgnnnnnnnnnnt----------- 106  Q
    ||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||          |               
T  32600911 ataatataagaaaatgaagaaaataattgattttttttactattccagttataatattaagtttactcgaagaaaatgaaaaaaaaaatatgaagaaaat 32601010  T
Q  107 gaagaaaataagtgagttatcatattaattttacctattccagttatcttcaatatctccagttgttctccaactatttcccacacttttggcccatgta 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  32601011 gaagaaaataagtgagttatcatattaattttacctattccagttatcttcaatatctcctgttgttctccaactatttcccacacttttggcccatgta 32601110  T
Q  207 gctggatcttcccatcccctatg 229  Q
    || ||||||||||||||||||||    
T  32601111 gcaggatcttcccatcccctatg 32601133  T

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Target: chr6; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 118 - 229
Target Start/End: Original strand, 32590551 - 32590662
Alignment:
Q  118 gtgagttatcatattaattttacctattccagttatcttcaatatctccagttgttctccaactatttcccacacttttggcccatgtagctggatcttc 217  Q
    |||| |||||||||||||||||||||| ||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||    
T  32590551 gtgaattatcatattaattttacctatgccaattatctttaatatctcctgttgttctccaactatttcccacacttttggcccatgttgctggatcttc 32590650  T
Q  218 ccatcccctatg 229  Q
    |  |||||||||    
T  32590651 ctttcccctatg 32590662  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 193
Target Start/End: Complemental strand, 24883434 - 24883380
Alignment:
Q  139 acctattccagttatcttcaatatctccagttgttctccaactatttcccacact 193  Q
    |||||| ||| |||||||| ||||||   ||||||||||||||||||||||||||    
T  24883434 acctatcccatttatcttcgatatctgatgttgttctccaactatttcccacact 24883380  T

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Target: chr1 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 137 - 229
Target Start/End: Original strand, 34594089 - 34594181
Alignment:
Q  137 ttacctattccagttatcttcaatatctccagttgttctccaactatttcccacacttttggcccatgtagctggatcttcccatcccctatg 229  Q
    |||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||    
T  34594089 ttacctattccaattatcttcaatatcacctgttgttctccaactatttcccacactttttgcccatgttgctgggtcttcccatcccctatg 34594181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 139 - 226
Target Start/End: Original strand, 34578391 - 34578478
Alignment:
Q  139 acctattccagttatcttcaatatctccagttgttctccaactatttcccacacttttggcccatgtagctggatcttcccatcccct 226  Q
    |||| ||||| |||||||| ||||| || || |||||||||||||||||||||||||||||||| || || |||||||||||||||||    
T  34578391 acctcttccaattatcttctatatcacccgtggttctccaactatttcccacacttttggcccacgttgcaggatcttcccatcccct 34578478  T

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