View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4913_low_2 (Length: 454)
Name: NF4913_low_2
Description: NF4913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4913_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 184 - 438
Target Start/End: Original strand, 32826829 - 32827083
Alignment:
| Q |
184 |
tagagaaagaagacctttaaatttttcaaccaagtcctctttaaaggcgatatccctcaattcctgaaaaagttgctcaaagaggttgggatctagtttc |
283 |
Q |
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| T |
32826829 |
tagagaaagaagacctttaaatttttcaaccaagtcctctttaaaggcgatatccctcaattcctgaaaaagttgctcaaagaggttgggatctagtttc |
32826928 |
T |
|
| Q |
284 |
gatgcttcttgtccttgtacaaaatgccgagattttaagggaaatgtaatcccttctaataaaactctgtcaattgcagcaacaatgtcctcatctatca |
383 |
Q |
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|| |||| ||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
32826929 |
gaggcttgttgtccttgtacagaatgccgagattttaagggaaaagtaatcccttctaataaaactctgtcaattgcagcaacaacgtcctcatctatca |
32827028 |
T |
|
| Q |
384 |
tagcatcaatttcttcaaagtctttgctgacaaactttgaagtgttgcctttgct |
438 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32827029 |
tagcatcaatttcttcaaagtctttgctgacaaactttgaagtgttgcctttgct |
32827083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 47 - 107
Target Start/End: Original strand, 32826746 - 32826806
Alignment:
| Q |
47 |
caaattgtcgagtttctcaaaatcctcacaatgttgttgagaaagctaacaacaacaccga |
107 |
Q |
| |
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| T |
32826746 |
caaattgtcgagtttctcaaaatcctcacaatgttgttgggaaagctaacaacaacaccga |
32826806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 128; Significance: 5e-66; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 68 - 430
Target Start/End: Complemental strand, 39737865 - 39737503
Alignment:
| Q |
68 |
atcctcacaatgttgttgagaaagctaacaacaacaccgacttgttctaattggtcagaggaaaacgcgtcagcactatcgtcaattttttctttgactg |
167 |
Q |
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| T |
39737865 |
atcctcacaatgttgttgagaaggttaacaacagcaccgacttgttctaattggagagaggaaaatgcatcagcattagcgtcaattttttccttgactg |
39737766 |
T |
|
| Q |
168 |
tgttgaagttaacttctaga-gaaagaagacctttaaatttttcaaccaagtcctctttaaaggcgatatccctcaattcctgaaaaagttgctcaaaga |
266 |
Q |
| |
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|||||| ||||||| |||| | ||| |||||| ||||||||||||||| ||||||| || |||||||| |||||||||| |||||||||| || |
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| T |
39737765 |
cgttgaaattaactt-tagaagtgagaccttctttaagtttttcaaccaagtctcctttaaaagcaatatcccttaattcctgaagaagttgctcaggga |
39737667 |
T |
|
| Q |
267 |
ggttgggatctagtttcgatgcttcttgtccttgtacaaaatgccgagattttaagggaaatgtaatcccttctaataaaactctgtcaattgcagcaac |
366 |
Q |
| |
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| |||||||| |||| || |||| ||||||| ||| ||||| | |||||||||| || ||||||||||| ||||||||||||||||||| |||| |
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| T |
39737666 |
gattgggatcccgttttgagtattctcgtccttggacagaatgctgggattttaaggaaagagtaatcccttccgataaaactctgtcaattgccgcaat |
39737567 |
T |
|
| Q |
367 |
aatgtcctcatctatcatagcatcaatttcttcaaagtctttgctgacaaactttgaagtgttg |
430 |
Q |
| |
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| |||||||||| ||||||||||| ||||||| ||||| ||||||| || |||||||||||| |
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| T |
39737566 |
gacatcctcatctaccatagcatcaaattcttcagagtctatgctgactaattttgaagtgttg |
39737503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 68 - 436
Target Start/End: Original strand, 39856231 - 39856599
Alignment:
| Q |
68 |
atcctcacaatgttgttgagaaagctaacaacaacaccgacttgttctaattggtcagaggaaaacgcgtcagcactatcgtcaattttttctttgactg |
167 |
Q |
| |
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|||||| ||||||| |||| || | |||||||||||||||||||||||| ||||| ||| || ||| |||| || || | ||||||||||| |||||| |
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| T |
39856231 |
atcctcgcaatgttcttgacaaggttaacaacaacaccgacttgttctagttggtgagaagagaacatgtcaacattagcttcaattttttccatgactg |
39856330 |
T |
|
| Q |
168 |
tgttgaagttaacttctagagaaagaagacctttaaatttttcaaccaagtcctctttaaaggcgatatccctcaattcctgaaaaagttgctcaaagag |
267 |
Q |
| |
|
||||||| |||||| ||| ||| ||||||||||||||||||||| |||||||| |||||||||||||||||| || ||||||||| || |
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| T |
39856331 |
tgttgaaactaactttaggagtgagaccttgtttaaatttttcaaccaagtcttctttaaaagcgatatccctcaattccataagaagttgctcttggaa |
39856430 |
T |
|
| Q |
268 |
gttgggatctagtttcgatgcttcttgtccttgtacaaaatgccgagattttaagggaaatgtaatcccttctaataaaactctgtcaattgcagcaaca |
367 |
Q |
| |
|
||||||||| || ||||| |||||||| ||| ||| |||| |||||||||||| || |||||||||||| |||| |||||||| || ||| ||| |
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| T |
39856431 |
gttgggatccagcttcgagacttcttgtttttgaacagaatggtgagattttaaggaaagagtaatcccttctgataacactctgtcgatcgcaccaatg |
39856530 |
T |
|
| Q |
368 |
atgtcctcatctatcatagcatcaatttcttcaaagtctttgctgacaaactttgaagtgttgcctttg |
436 |
Q |
| |
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| |||||||||||||||||||||||||||| ||||||||||||||||| ||| |||||||| ||||| |
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| T |
39856531 |
acatcctcatctatcatagcatcaatttctttcaagtctttgctgacaaattttaaagtgttggctttg |
39856599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 47 - 398
Target Start/End: Original strand, 39863408 - 39863763
Alignment:
| Q |
47 |
caaattgtcgagtttctcaaaatcct-cacaatgttgttgagaaagctaacaacaacaccgacttgttctaattggtcagaggaaaacgcgtcagcacta |
145 |
Q |
| |
|
|||||| |||||||||||||| ||| ||||||| ||||||||| | ||||||||||||| |||||||||||||| ||| | || ||||||||| || |
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| T |
39863408 |
caaattttcgagtttctcaaacaccttcacaatggtgttgagaaggttaacaacaacaccaacttgttctaattgacgagacgtgaaagcgtcagcatta |
39863507 |
T |
|
| Q |
146 |
tcgtcaattttttctttgactgtgttgaagttaacttctagagaaagaagacctttaaatttttcaaccaagtcctctttaaaggcgatatccctcaatt |
245 |
Q |
| |
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| ||||||||||| |||||||| ||||||||||||| |||| | | |||| ||||||||||||||||| ||||||||||| ||||||||||||| |
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| T |
39863508 |
gcatcaattttttccttgactgtattgaagttaactttaggagagataccttcttttaatttttcaaccaagtcttctttaaaggcaatatccctcaatt |
39863607 |
T |
|
| Q |
246 |
cctgaaaaagttgctcaaagaggttgggatctagttt--cga-tgcttcttgtccttgtacaaaatgccgagattttaagggaaatgtaatcccttctaa |
342 |
Q |
| |
|
|||||| |||||||| | |||| ||||||| ||||| ||| ||||||||||||| ||| ||||| || ||| ||| | || ||| ||||||| | |
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|
| T |
39863608 |
cctgaagaagttgcttagggaggctgggatccagttttgcgacctcttcttgtccttgaacagaatgctgaaattgtaatgaaatggtattcccttcgga |
39863707 |
T |
|
| Q |
343 |
taaaactctgtcaattgcagcaacaatgtcctcatctatcatagcatcaatttctt |
398 |
Q |
| |
|
||||||| |||| |||||||||| || |||||| |||||||||||||||| |||| |
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|
| T |
39863708 |
taaaactttgtcgattgcagcaataacatcctcacctatcatagcatcaatatctt |
39863763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 71 - 409
Target Start/End: Complemental strand, 38980708 - 38980370
Alignment:
| Q |
71 |
ctcacaatgttgttgagaaagctaacaacaacaccgacttgttctaattggtcagaggaaaacgcgtcagcactatcgtcaattttttctttgactgtgt |
170 |
Q |
| |
|
|||||||||||||||| || | ||||| |||| ||||||||||| ||||| |||||||||| ||||||| || |||||| |||||| ||||||| | |
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| T |
38980708 |
ctcacaatgttgttgacaaggtcaacaaagacactgacttgttctagttggttagaggaaaacaagtcagcattagcgtcaaatttttccttgactgcat |
38980609 |
T |
|
| Q |
171 |
tgaagttaacttctagagaaagaagacctttaaat---ttttcaaccaagtcctctttaaaggcgatatccctcaattcctgaaaaagttgctcaaagag |
267 |
Q |
| |
|
||||||| ||| ||| ||||| |||||| |||| |||||||||||||| || |||| | ||||||| ||||||||||| ||||| |||| ||| |
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|
| T |
38980608 |
tgaagttgtctt-tagt-aaaga-gaccttcaaataatttttcaaccaagtctcattcaaagacaatatcccacaattcctgaagaagtttctcagggag |
38980512 |
T |
|
| Q |
268 |
gttgggatctagtttcgatgcttcttgtccttgtacaaaatgccgagattttaagggaaatgtaatcccttctaataaaactctgtcaattgcagcaaca |
367 |
Q |
| |
|
|||||||| ||||| || |||||||| |||| ||| ||||| ||||||||| || || |||||||||||| |||||||||||| || | ||||| |
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|
| T |
38980511 |
gttgggatacagttttgagacttcttgttcttggacagaatgctgagattttacggaaatggtaatcccttctgataaaactctgttgatagaagcaatg |
38980412 |
T |
|
| Q |
368 |
atgtcctcatctatcatagcatcaatttcttcaaagtctttg |
409 |
Q |
| |
|
| |||||||||||||||||||||| ||||| ||||||||| |
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|
| T |
38980411 |
acatcctcatctatcatagcatcaacttctttcaagtctttg |
38980370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 288 - 413
Target Start/End: Original strand, 39897025 - 39897150
Alignment:
| Q |
288 |
cttcttgtccttgtacaaaatgccgagattttaagggaaatgtaatcccttctaataaaactctgtcaattgcagcaacaatgtcctcatctatcatagc |
387 |
Q |
| |
|
|||||| |||||||||| ||| || || | ||||| || |||||||||||| ||||||||||||| |||||||||| | ||||||||||||||||| |
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|
| T |
39897025 |
cttcttctccttgtacagaattacgggactctaaggaaagagtaatcccttctgataaaactctgtcgattgcagcaatgacatcctcatctatcatagc |
39897124 |
T |
|
| Q |
388 |
atcaatttcttcaaagtctttgctga |
413 |
Q |
| |
|
|||||||||||| |||||| |||||| |
|
|
| T |
39897125 |
atcaatttcttccaagtctatgctga |
39897150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 44 - 258
Target Start/End: Original strand, 39846488 - 39846703
Alignment:
| Q |
44 |
ttccaaattgtcgagtttctcaaa-atcctcacaatgttgttgagaaagctaacaacaacaccgacttgttctaattggtcagaggaaaacgcgtcagca |
142 |
Q |
| |
|
|||||| || |||||||||||||| |||| | |||| |||||||||||| ||||||||||| ||||||| ||||| | ||| | ||| ||||||| |
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|
| T |
39846488 |
ttccaatttttcgagtttctcaaacatccactcaattttgttgagaaagttaacaacaacatgaacttgttttaattcgcgagaatataacatgtcagca |
39846587 |
T |
|
| Q |
143 |
ctatcgtcaattttttctttgactgtgttgaagttaacttctagagaaagaagacctttaaatttttcaaccaagtcctctttaaaggcgatatccctca |
242 |
Q |
| |
|
|| | || ||||| || |||||| |||||||| ||||| ||| |||| |||||||||| |||||||||| | |||||||||||||||||||| |
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|
| T |
39846588 |
ttagcttcgattttatccttgactacattgaagtttacttcacgagcaagacctagtttaaattttacaaccaagtcttttttaaaggcgatatccctca |
39846687 |
T |
|
| Q |
243 |
attcctgaaaaagttg |
258 |
Q |
| |
|
||||||||| |||||| |
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|
| T |
39846688 |
attcctgaagaagttg |
39846703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 74; Significance: 9e-34; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 68 - 282
Target Start/End: Complemental strand, 53495491 - 53495279
Alignment:
| Q |
68 |
atcctcacaatgttgttgagaaagctaacaacaacaccgacttgttctaattggtcagaggaaaacgcgtcagcactatcgtcaattttttctttgactg |
167 |
Q |
| |
|
|||||||||||||||||||||| | ||||||||||||| | |||||||||||| | |||||| ||||| |||||| || ||||||||||| | |||| || |
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| T |
53495491 |
atcctcacaatgttgttgagaaggttaacaacaacaccaatttgttctaattgctgagaggagaacgcatcagcattagcgtcaatttttaccttgattg |
53495392 |
T |
|
| Q |
168 |
tgttgaagttaacttctagagaaagaagacctttaa-atttttcaaccaagtcctctttaaaggcgatatccctcaattcctgaaaaagttgctcaaaga |
266 |
Q |
| |
|
||||||||||||| | ||| ||| |||||| ||||||||||||| |||||||||| |||||||||||||||||||| |||||||| | || |
|
|
| T |
53495391 |
cattgaagttaacttttggagtgagaccttctttaatttttttcaaccaag---tctttaaaggtgatatccctcaattcctgaagaagttgcttaggga |
53495295 |
T |
|
| Q |
267 |
ggttgggatctagttt |
282 |
Q |
| |
|
|||||||||| ||||| |
|
|
| T |
53495294 |
ggttgggatccagttt |
53495279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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