View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4913_low_3 (Length: 436)
Name: NF4913_low_3
Description: NF4913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4913_low_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 19 - 422
Target Start/End: Complemental strand, 1156137 - 1155735
Alignment:
| Q |
19 |
atatagatttatcaccttctctgttttacctatgtactgtttaaagttttcacactagactgattatgcatcagttgctgatttcacactgttatgttta |
118 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1156137 |
atatagatttatcaccttcactgttttacctatgtactgtttaaagttttcacactagactgattatgcatcagttgctgatttcacactgttatgtttg |
1156038 |
T |
|
| Q |
119 |
tgcagagttacagcatattgaaggcagctttaagctcaacatctgctctaacgaatggtctccgtcacttgctaacctaagtaattaggcatgaggaatg |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
1156037 |
tgcagagttacagcatattgaaggcagctttaagctcaacatctgctctaacgaatggtctccgtcacttgctaacctaagtaattaagcatgaggaatg |
1155938 |
T |
|
| Q |
219 |
ggaaccattaactttatgttgtttgtttaagagatgttaatagccttagaggaagcttgtaatgaaaaacatttctagactactattttgttattgttat |
318 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| ||||| | |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
1155937 |
ggaaccattaactttatgttgtttgtataagatatgtt-agagccttagaggaagcttgtaatgaaaaacatttctagattactattttgttattgttat |
1155839 |
T |
|
| Q |
319 |
atcatttttggcactaccgttttaagatcttaattttgagtttagaaacacatatatgtaaaatcagttacatttctttcctctccacattatctgtata |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1155838 |
atcatttttggcactaccgttttaagatcttaattttgagtttagaaacacatatatgtaaaatcagttacatttctttcctctccacattatctgtatt |
1155739 |
T |
|
| Q |
419 |
ttct |
422 |
Q |
| |
|
|||| |
|
|
| T |
1155738 |
ttct |
1155735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 119 - 194
Target Start/End: Complemental strand, 23284329 - 23284254
Alignment:
| Q |
119 |
tgcagagttacagcatattgaaggcagctttaagctcaacatctgctctaacgaatggtctccgtcacttgctaac |
194 |
Q |
| |
|
|||||||| ||| |||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |
|
|
| T |
23284329 |
tgcagagtcacaacatattcaaggcagctttaagctcaacgcctgctctaacgaatggtctccgtcacttgttaac |
23284254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 99 - 194
Target Start/End: Complemental strand, 23250179 - 23250084
Alignment:
| Q |
99 |
atttcacactgttatgtttatgcagagttacagcatattgaaggcagctttaagctcaacatctgctctaacgaatggtctccgtcacttgctaac |
194 |
Q |
| |
|
|||||||| |||| |||| | |||||| || |||||| ||||| |||||| ||||||| |||||||||||||||||||||||||||||| |||| |
|
|
| T |
23250179 |
atttcacattgttgtgttggttcagagtcgcaacatatttaaggctgctttatgctcaacgtctgctctaacgaatggtctccgtcacttgttaac |
23250084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 133 - 195
Target Start/End: Complemental strand, 23321571 - 23321509
Alignment:
| Q |
133 |
atattgaaggcagctttaagctcaacatctgctctaacgaatggtctccgtcacttgctaacc |
195 |
Q |
| |
|
|||||||| || ||||||| |||||||||||||||||| ||||||||| |||||||| ||||| |
|
|
| T |
23321571 |
atattgaaagctgctttaacctcaacatctgctctaacaaatggtctcagtcacttgttaacc |
23321509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University