View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4913_low_8 (Length: 279)
Name: NF4913_low_8
Description: NF4913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4913_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 144; Significance: 9e-76; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 29631805 - 29631638
Alignment:
| Q |
1 |
tctagaacctttggaatgcagtgtcgttgcacgggccgaggagattgcatcccgagtgtatcgcaacctcgcaccatccattccgagagtccgagatctg |
100 |
Q |
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| T |
29631805 |
tctagaacctttggaatgcagtgtcgttgcacgggccgcggagattgcatcccgagtttatcgcaaccccgcaccatccattccgagagtcctagatctg |
29631706 |
T |
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| Q |
101 |
aaaacgacgtgtgtttgtcgtttccagcgttatcacagtccgttgtattgcaatagctagctgctgag |
168 |
Q |
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| T |
29631705 |
aaaacgacatgtgtttgtcgtttccagcgttatcacagtccgttgtattacaatagctagctgctgag |
29631638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 204 - 268
Target Start/End: Complemental strand, 29631603 - 29631539
Alignment:
| Q |
204 |
gaagtaagctgttacggttgaccaggaaggaagaaagggaaaggagagagtgcgactcacaggtt |
268 |
Q |
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| T |
29631603 |
gaagtaagctgttacggttgaccaggaaggaagaaagggaaaggagagagtgcgactcactggtt |
29631539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 29630686 - 29630583
Alignment:
| Q |
1 |
tctagaacctttggaatgcagtgtcgttgcacgggccgaggagattgcatcccgagtgtatcgcaacctcgcaccatccattccgagagtccgagatctg |
100 |
Q |
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||||||||||| |||||||||||| |||||||| |||| || | |||||||||||| | | |||| ||||| |||||||||||||||||||||| | |
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| T |
29630686 |
tctagaaccttaggaatgcagtgttgttgcacgcgccgcggtgtttgcatcccgagcttcttgcaattctgcaccgtccattccgagagtccgagatcgg |
29630587 |
T |
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| Q |
101 |
aaaa |
104 |
Q |
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|||| |
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| T |
29630586 |
aaaa |
29630583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 105
Target Start/End: Original strand, 28390248 - 28390281
Alignment:
| Q |
72 |
caccatccattccgagagtccgagatctgaaaac |
105 |
Q |
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| T |
28390248 |
caccatccattctgagagtccgagatctgaaaac |
28390281 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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