View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4913_low_9 (Length: 256)

Name: NF4913_low_9
Description: NF4913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4913_low_9
NF4913_low_9
[»] chr1 (3 HSPs)
chr1 (1-246)||(27045424-27045669)
chr1 (32-130)||(22626469-22626567)
chr1 (1-135)||(21785855-21785986)
[»] chr4 (8 HSPs)
chr4 (1-246)||(15349256-15349501)
chr4 (1-246)||(14687184-14687435)
chr4 (1-242)||(42711187-42711434)
chr4 (1-135)||(45240269-45240404)
chr4 (1-135)||(11498025-11498159)
chr4 (16-125)||(11918125-11918233)
chr4 (1-122)||(18290701-18290822)
chr4 (1-136)||(10629417-10629549)
[»] chr6 (8 HSPs)
chr6 (1-246)||(22062923-22063168)
chr6 (1-246)||(19586986-19587222)
chr6 (1-136)||(18188981-18189116)
chr6 (1-152)||(23519163-23519314)
chr6 (1-125)||(17818194-17818318)
chr6 (1-81)||(18852742-18852819)
chr6 (1-43)||(29685293-29685335)
chr6 (218-246)||(29685084-29685112)
[»] chr3 (10 HSPs)
chr3 (1-246)||(6813419-6813664)
chr3 (1-249)||(12777916-12778170)
chr3 (5-246)||(15024254-15024501)
chr3 (1-135)||(20562017-20562151)
chr3 (1-135)||(20564325-20564459)
chr3 (4-135)||(20559709-20559840)
chr3 (1-136)||(13090219-13090351)
chr3 (1-136)||(9362369-9362501)
chr3 (1-136)||(13096380-13096512)
chr3 (1-44)||(3246925-3246968)
[»] chr7 (13 HSPs)
chr7 (1-246)||(540171-540416)
chr7 (1-246)||(16327179-16327430)
chr7 (1-246)||(9581453-9581704)
chr7 (1-246)||(9729305-9729556)
chr7 (5-246)||(4311279-4311525)
chr7 (5-246)||(8783505-8783752)
chr7 (83-246)||(14223144-14223313)
chr7 (1-136)||(23513736-23513871)
chr7 (1-126)||(4462119-4462244)
chr7 (1-136)||(13741088-13741223)
chr7 (1-132)||(5395811-5395942)
chr7 (1-136)||(12565670-12565805)
chr7 (1-139)||(10439750-10439888)
[»] scaffold0090 (1 HSPs)
scaffold0090 (1-246)||(29312-29563)
[»] chr8 (4 HSPs)
chr8 (1-246)||(20000852-20001100)
chr8 (1-135)||(20040481-20040615)
chr8 (1-139)||(21855188-21855323)
chr8 (1-135)||(17619412-17619543)
[»] scaffold0035 (1 HSPs)
scaffold0035 (1-246)||(51965-52216)
[»] chr5 (7 HSPs)
chr5 (1-246)||(23712119-23712370)
chr5 (1-130)||(20446257-20446386)
chr5 (1-136)||(21282322-21282458)
chr5 (1-122)||(18487475-18487596)
chr5 (1-125)||(23602052-23602173)
chr5 (1-136)||(24939200-24939332)
chr5 (5-119)||(24218516-24218627)
[»] scaffold0485 (1 HSPs)
scaffold0485 (1-246)||(11316-11568)
[»] chr2 (2 HSPs)
chr2 (1-136)||(24500997-24501132)
chr2 (5-144)||(25339522-25339661)
[»] scaffold0220 (1 HSPs)
scaffold0220 (17-136)||(11741-11860)
[»] scaffold0222 (1 HSPs)
scaffold0222 (1-122)||(18509-18630)
[»] scaffold0566 (1 HSPs)
scaffold0566 (1-135)||(1275-1409)
[»] scaffold0026 (1 HSPs)
scaffold0026 (32-136)||(17034-17138)
[»] scaffold0113 (1 HSPs)
scaffold0113 (1-136)||(38045-38177)
[»] scaffold1184 (1 HSPs)
scaffold1184 (6-40)||(537-571)
[»] scaffold0012 (1 HSPs)
scaffold0012 (1-78)||(12856-12930)


Alignment Details
Target: chr1 (Bit Score: 246; Significance: 1e-136; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 27045669 - 27045424
Alignment:
Q  1 tacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27045669 tacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgatt 27045570  T
Q  101 ctccatgcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagtagtataaaagtttagataatagttctcatctatcctcttgatcc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27045569 ctccatgcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagtagtataaaagtttagataatagttctcatctatcctcttgatcc 27045470  T
Q  201 cttgattcatactcaccccaaacttcttagcaataaaagtgatgat 246  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  27045469 cttgattcatactcaccccaaacttcttagcaataaaagtgatgat 27045424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 32 - 130
Target Start/End: Original strand, 22626469 - 22626567
Alignment:
Q  32 ttttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgattctccatgcatattggtaattgtgagtaggg 130  Q
    ||||| |||||| ||||||||||||| ||||||||||||||||||||||| ||||||||  || ||| ||||||  |||||||||||||||||| ||||    
T  22626469 ttttctaccaccaccggattagtaatatccgaattaggtagaataatcaagcaattagcattattgactctccactcatattggtaattgtgagaaggg 22626567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 21785855 - 21785986
Alignment:
Q  1 tacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgatt 100  Q
    ||||||||||||||| ||||||||||   | ||||| ||||||| |||||||||||| || ||||||||||||| ||||||  |||||||  || ||| |    
T  21785855 tacctgtgggttagtgccaacataaa---agttttctaccaccttcggattagtaatatctgaattaggtagaaaaatcaagaaattagcattattgact 21785951  T
Q  101 ctccatgcatattggtaattgtgagtagggtcatg 135  Q
    |||||  ||| |||||| |||| || |||| ||||    
T  21785952 ctccactcatgttggtacttgttagaagggccatg 21785986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 15349256 - 15349501
Alignment:
Q  1 tacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15349256 tacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgatt 15349355  T
Q  101 ctccatgcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagtagtataaaagtttagataatagttctcatctatcctcttgatcc 200  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15349356 ctccattcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagtagtataaaagtttagataatagttctcatctatcctcttgatcc 15349455  T
Q  201 cttgattcatactcaccccaaacttcttagcaataaaagtgatgat 246  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  15349456 cttgattcatactcaccccaaacttcttagcaataaaagtgatgat 15349501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 14687184 - 14687435
Alignment:
Q  1 tacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgatt 100  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||    
T  14687184 tacctgtgggttagtaccaacataaagcaaattttccaccgcctccggattagtaatgtccgaattaggtagcataatcaaacaattagctctaataatt 14687283  T
Q  101 ctccatgcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagt------agtataaaagtttagataatagttctcatctatcctct 194  Q
    ||||||  ||||||||||||||||||||||||||||||| ||||||||||||||||      |||||| |||||||||||||||||||| ||||||||||    
T  14687284 ctccatttatattggtaattgtgagtagggtcatgggttctaaggaatgacaaagtagtgagagtatataagtttagataatagttctcctctatcctct 14687383  T
Q  195 tgatcccttgattcatactcaccccaaacttcttagcaataaaagtgatgat 246  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  14687384 tgatcccttgattcacactcaccccaaacttcttagcaataaaagtgatgat 14687435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 42711187 - 42711434
Alignment:
Q  1 tacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||    
T  42711187 tacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagttctaataatt 42711286  T
Q  101 ctccatgcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagt------agtataaaagtttagataatagttctcatctatcctct 194  Q
    |||||| ||||||||||||| |||||| ||||||||||| ||||||| ||||||||      |||||| |||||| ||||||| || |||||||||||||    
T  42711287 ctccattcatattggtaattatgagtatggtcatgggttctaaggaaagacaaagtagtgagagtatataagtttggataataattttcatctatcctct 42711386  T
Q  195 tgatcccttgattcatactcaccccaaacttcttagcaataaaagtga 242  Q
    |||||| |||||||| |||||||| |||| ||||||||||||||||||    
T  42711387 tgatcctttgattcacactcaccctaaacctcttagcaataaaagtga 42711434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 45240269 - 45240404
Alignment:
Q  1 tacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaa-ttagctctaatgat 99  Q
    ||||||||||||||| |||||||||| ||| ||||| |||||||||||||||||||| | |||||| |||||||||||||| ||| |||||  || |||     
T  45240269 tacctgtgggttagtgccaacataaaccaagttttctaccacctccggattagtaatattcgaatttggtagaataatcaagcaatttagcgttattgac 45240368  T
Q  100 tctccatgcatattggtaattgtgagtagggtcatg 135  Q
    ||||||  |||||||||||||||||| |||| ||||    
T  45240369 tctccactcatattggtaattgtgagaagggccatg 45240404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 11498025 - 11498159
Alignment:
Q  1 tacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgatt 100  Q
    ||||||||||||||| |||||||||| ||| ||||| |||||||||||||||||||| |  |||||||||||||||||||| |||||| |   | ||| |    
T  11498025 tacctgtgggttagtgccaacataaaccaagttttctaccacctccggattagtaatatttgaattaggtagaataatcaagcaattaacataattgact 11498124  T
Q  101 ctccatgcatattggtaattgtgagtagggtcatg 135  Q
    |||||  ||||||||||||||| || |||||||||    
T  11498125 ctccactcatattggtaattgttagaagggtcatg 11498159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 16 - 125
Target Start/End: Original strand, 11918125 - 11918233
Alignment:
Q  16 accaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgattctccatgcatattgg 115  Q
    ||||||||||| ||| ||||||||||||| ||| ||||| ||||||| ||||||||||||||||||| ||||||| ||| ||| | ||||  ||||||||    
T  11918125 accaacataaaacaatttttccaccaccttcgggttagttatgtccggattaggtagaataatcaaa-aattagccctattgactttccactcatattgg 11918223  T
Q  116 taattgtgag 125  Q
    ||||||||||    
T  11918224 taattgtgag 11918233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 18290822 - 18290701
Alignment:
Q  1 tacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgatt 100  Q
    ||||||||||||||| |||||||||| ||| ||||| | |||||||||||||||||| || ||||||||||||||||||||  |||| ||  || ||| |    
T  18290822 tacctgtgggttagtgccaacataaaccaagttttctatcacctccggattagtaatatctgaattaggtagaataatcaataaatttgcattattgaat 18290723  T
Q  101 ctccatgcatattggtaattgt 122  Q
     ||||  |||||||||||||||    
T  18290722 ttccactcatattggtaattgt 18290701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 10629549 - 10629417
Alignment:
Q  1 tacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgatt 100  Q
    ||||||||||||||| ||||||||||   | ||||| ||| ||| |||||||||||| || ||||||||||||||||||||  |||||||  || ||| |    
T  10629549 tacctgtgggttagtgccaacataaa---agttttctaccgccttcggattagtaatatctgaattaggtagaataatcaagaaattagcattattgact 10629453  T
Q  101 ctccatgcatattggtaattgtgagtagggtcatgg 136  Q
    |||||  |||||||| ||||||||| |||| |||||    
T  10629452 ctccactcatattgggaattgtgagaagggccatgg 10629417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 234; Significance: 1e-129; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 22062923 - 22063168
Alignment:
Q  1 tacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22062923 tacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgatt 22063022  T
Q  101 ctccatgcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagtagtataaaagtttagataatagttctcatctatcctcttgatcc 200  Q
    |||||||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22063023 ctccatgcatgttggtaattgtgagtagagtcatggtttttaaggaatgacaaagtagtataaaagtttagataatagttctcatctatcctcttgatcc 22063122  T
Q  201 cttgattcatactcaccccaaacttcttagcaataaaagtgatgat 246  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  22063123 cttgattcatactcaccccaaacttcttagcaataaaagtgatgat 22063168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 19586986 - 19587222
Alignment:
Q  1 tacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgatt 100  Q
    ||||||||||||| |||||||||||| ||||||||||||||||||| |||||               ||||||||||||||||||||||||||||| |||    
T  19586986 tacctgtgggttaataccaacataaatcaaattttccaccacctccagatta---------------ggtagaataatcaaacaattagctctaataatt 19587070  T
Q  101 ctccatgcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagt------agtataaaagtttagataatagttctcatctatcctct 194  Q
    |||| |  |||||||||||||| ||||||  |||||||| ||||||| ||||||||      |||||| |||| |||||||||||||   ||||||||||    
T  19587071 ctccgtttatattggtaattgtaagtaggtccatgggttctaaggaaggacaaagtagtgagagtatataagtgtagataatagttcctctctatcctct 19587170  T
Q  195 tgatcccttgattcatactcaccccaaacttcttagcaataaaagtgatgat 246  Q
    ||||||||||||||| |||||||||||||||| |||||||||| ||||||||    
T  19587171 tgatcccttgattcagactcaccccaaacttcctagcaataaaggtgatgat 19587222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 18188981 - 18189116
Alignment:
Q  1 tacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgatt 100  Q
    ||||||||||||||| |||||||||| ||| ||||| |||||||||||||||||| | ||||||||||||||||||||||| ||||||||  || ||| |    
T  18188981 tacctgtgggttagtgccaacataaaccaagttttctaccacctccggattagtattatccgaattaggtagaataatcaagcaattagcattattgact 18189080  T
Q  101 ctccatgcatattggtaattgtgagtagggtcatgg 136  Q
    |||||  |||||||||||||||||| ||||||||||    
T  18189081 ctccactcatattggtaattgtgagaagggtcatgg 18189116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 152
Target Start/End: Original strand, 23519163 - 23519314
Alignment:
Q  1 tacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgatt 100  Q
    |||| |||||||||| ||||||||||||||||||||||||| |||||||||||| |||||| ||| |||||||||||||||||||||||| ||| | | |    
T  23519163 tacccgtgggttagttccaacataaagcaaattttccaccatctccggattagttatgtccaaataaggtagaataatcaaacaattagccctatttact 23519262  T
Q  101 ctccatgcatattggtaattgtgagtagggtcatgggttttaaggaatgaca 152  Q
     |||   |||||||||| ||||||| ||||||||||||| ||||||| ||||    
T  23519263 ttccgcacatattggtagttgtgagaagggtcatgggttataaggaaagaca 23519314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 17818318 - 17818194
Alignment:
Q  1 tacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgatt 100  Q
    ||||||||||||||| |||||||||| ||| ||||| ||||||| |||||||||||| || ||||||||||||||||||||  |||||||  || ||| |    
T  17818318 tacctgtgggttagtgccaacataaaccaagttttctaccacctacggattagtaatatctgaattaggtagaataatcaagaaattagcattattgact 17818219  T
Q  101 ctccatgcatattggtaattgtgag 125  Q
    |||||  ||||||||||||||||||    
T  17818218 ctccactcatattggtaattgtgag 17818194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 18852819 - 18852742
Alignment:
Q  1 tacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaa 81  Q
    ||||||||||||||| ||||||||||   ||||||| |||| ||||||||||||||| || ||||||||||||||||||||    
T  18852819 tacctgtgggttagtgccaacataaa---aattttctaccatctccggattagtaatatctgaattaggtagaataatcaa 18852742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 29685335 - 29685293
Alignment:
Q  1 tacctgtgggttagtaccaacataaagcaaattttccaccacc 43  Q
    ||||||||||||||||| |||||||||||||||||||||||||    
T  29685335 tacctgtgggttagtactaacataaagcaaattttccaccacc 29685293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 218 - 246
Target Start/End: Complemental strand, 29685112 - 29685084
Alignment:
Q  218 ccaaacttcttagcaataaaagtgatgat 246  Q
    |||||||||||||||||||||||||||||    
T  29685112 ccaaacttcttagcaataaaagtgatgat 29685084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 6813664 - 6813419
Alignment:
Q  1 tacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6813664 tacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgatt 6813565  T
Q  101 ctccatgcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagtagtataaaagtttagataatagttctcatctatcctcttgatcc 200  Q
    |||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6813564 ctccatgcatattggtaattgtgagtagagtcatggtttttaaggaatgacaaagtagtataaaagtttagataatagttctcatctatcctcttgatcc 6813465  T
Q  201 cttgattcatactcaccccaaacttcttagcaataaaagtgatgat 246  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||    
T  6813464 cttgattcatactcacctcaaacttcttagcaataaaagtgatgat 6813419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 12777916 - 12778170
Alignment:
Q  1 tacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||    
T  12777916 tacctgtgggttagtaccaacataaagcaaattttccaccacctccgaattagtaatgtccgaattaggtagaataatcaaacaattagttctaataatt 12778015  T
Q  101 ctccatgcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagt------agtataaaagtttagataatagttctcatctatcctct 194  Q
    |||||| ||||||| |||||||||||||||||||||||| ||||||| ||||||||      |||| | |||||| ||||||| || || ||||||||||    
T  12778016 ctccattcatattgataattgtgagtagggtcatgggttctaaggaaggacaaagtagtgagagtaaataagtttggataataattttcctctatcctct 12778115  T
Q  195 tgatcccttgattcatactcaccccaaacttcttagcaataaaagtgatgatgtc 249  Q
    ||||||||||||||| |||||||| |||| ||||||||||||||| |||||||||    
T  12778116 tgatcccttgattcacactcaccctaaacctcttagcaataaaagggatgatgtc 12778170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 5 - 246
Target Start/End: Complemental strand, 15024501 - 15024254
Alignment:
Q  5 tgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgattctcc 104  Q
    ||||| ||||||||||||||| |||||||||||||||||||||||||||| ||||| | ||||||||||||||| ||||||||||||||| | |||||||    
T  15024501 tgtggattagtaccaacataatgcaaattttccaccacctccggattagttatgtctggattaggtagaataataaaacaattagctctattaattctcc 15024402  T
Q  105 atgcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagt------agtataaaagtttagataatagttctcatctatcctcttgat 198  Q
    || |||||||||||||||||||||||||||||||| ||||||| ||||||||      |||||| |||| ||||||||||| | | ||||||||||||||    
T  15024401 attcatattggtaattgtgagtagggtcatgggttctaaggaaggacaaagtagtgagagtatataagtatagataatagtacccctctatcctcttgat 15024302  T
Q  199 cccttgattcatactcaccccaaacttcttagcaataaaagtgatgat 246  Q
    ||||||||||| |||||||||||||||  |||||||||||||||||||    
T  15024301 cccttgattcacactcaccccaaactttctagcaataaaagtgatgat 15024254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 20562151 - 20562017
Alignment:
Q  1 tacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgatt 100  Q
    ||||||||||||||| |||||| ||| | | ||||| |||||||||| ||||||||| || ||||||||||||||||||||  ||||||   || ||| |    
T  20562151 tacctgtgggttagtgccaacacaaacctagttttctaccacctccgaattagtaatatctgaattaggtagaataatcaagaaattagtagtattgact 20562052  T
Q  101 ctccatgcatattggtaattgtgagtagggtcatg 135  Q
    |||||  |||||||||||||||||| |||| ||||    
T  20562051 ctccactcatattggtaattgtgagaagggccatg 20562017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 20564459 - 20564325
Alignment:
Q  1 tacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgatt 100  Q
    ||||||||||||||| |||||| ||| | | ||||| |||||||||| ||||||||| || ||||||||||||||||||||  ||||||   || ||| |    
T  20564459 tacctgtgggttagtgccaacacaaacctagttttctaccacctccgaattagtaatatctgaattaggtagaataatcaagaaattagtagtattgact 20564360  T
Q  101 ctccatgcatattggtaattgtgagtagggtcatg 135  Q
    |||||  |||||||||||||||||| |||| ||||    
T  20564359 ctccactcatattggtaattgtgagaagggccatg 20564325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 4 - 135
Target Start/End: Complemental strand, 20559840 - 20559709
Alignment:
Q  4 ctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgattctc 103  Q
    |||||||||||| |||||| ||| | | ||||| |||||||||| ||||||||| || ||||||||||||||||||||  ||||||   || ||| ||||    
T  20559840 ctgtgggttagtgccaacacaaacctagttttctaccacctccgaattagtaatatctgaattaggtagaataatcaagaaattagtagtattgactctc 20559741  T
Q  104 catgcatattggtaattgtgagtagggtcatg 135  Q
    ||  |||||||||||||||||| |||| ||||    
T  20559740 cactcatattggtaattgtgagaagggccatg 20559709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 13090219 - 13090351
Alignment:
Q  1 tacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgatt 100  Q
    ||||||||||||||| ||||||||||   | ||||| ||||||| |||||||||||| || ||||||||||||||||||||  |||||||  || ||| |    
T  13090219 tacctgtgggttagtgccaacataaa---agttttctaccaccttcggattagtaatatctgaattaggtagaataatcaagaaattagcattattgact 13090315  T
Q  101 ctccatgcatattggtaattgtgagtagggtcatgg 136  Q
    | |||  |||||||| ||||||||| |||| |||||    
T  13090316 caccactcatattgggaattgtgagaagggccatgg 13090351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 9362369 - 9362501
Alignment:
Q  1 tacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgatt 100  Q
    ||||||||||||||| ||||||||||   | ||||| ||||||| |||||||||||| |  ||||||||||||||||||||  |||||||  || ||| |    
T  9362369 tacctgtgggttagtgccaacataaa---agttttctaccaccttcggattagtaatatttgaattaggtagaataatcaagaaattagcattattgact 9362465  T
Q  101 ctccatgcatattggtaattgtgagtagggtcatgg 136  Q
    |||||  ||||||||  |||||||| |||| |||||    
T  9362466 ctccactcatattggggattgtgagaagggccatgg 9362501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 13096512 - 13096380
Alignment:
Q  1 tacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgatt 100  Q
    |||||||||||||||  |||||||||   | ||||| ||||||| |||||||||||| || ||||||||||||||||||||  ||||||   || ||| |    
T  13096512 tacctgtgggttagtgtcaacataaa---agttttctaccaccttcggattagtaatatctgaattaggtagaataatcaagaaattagaattattgact 13096416  T
Q  101 ctccatgcatattggtaattgtgagtagggtcatgg 136  Q
    |||||  ||| |||| ||||||||| |||| |||||    
T  13096415 ctccactcatgttgggaattgtgagaagggccatgg 13096380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 3246925 - 3246968
Alignment:
Q  1 tacctgtgggttagtaccaacataaagcaaattttccaccacct 44  Q
    ||||||||||||||||| || ||||| |||||||||||||||||    
T  3246925 tacctgtgggttagtacaaaaataaaacaaattttccaccacct 3246968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 230; Significance: 1e-127; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 540171 - 540416
Alignment:
Q  1 tacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  540171 tacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctttaatgatt 540270  T
Q  101 ctccatgcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagtagtataaaagtttagataatagttctcatctatcctcttgatcc 200  Q
    |||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  540271 ctcctttcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagtagtataaaagtttagataatagttctcatctatcctcttgatcc 540370  T
Q  201 cttgattcatactcaccccaaacttcttagcaataaaagtgatgat 246  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||    
T  540371 cttgattcacactcaccccaaacttcttagcaataaaagtgatgat 540416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 16327179 - 16327430
Alignment:
Q  1 tacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgatt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||    
T  16327179 tacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaatagtcaaacaattagctctaataatt 16327278  T
Q  101 ctccatgcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagt------agtataaaagtttagataatagttctcatctatcctct 194  Q
    |||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||      |||||| ||||||||||||||||| || ||||||||||    
T  16327279 ctccattcatattggtaattgtgagtagggtcatgggttataaggaaggacaaagtagtaagagtatataagtttagataatagttttcctctatcctct 16327378  T
Q  195 tgatcccttgattcatactcaccccaaacttcttagcaataaaagtgatgat 246  Q
    ||||||||||||||| |||||||| |||| ||||||||||||||||||||||    
T  16327379 tgatcccttgattcacactcaccctaaacctcttagcaataaaagtgatgat 16327430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 9581704 - 9581453
Alignment:
Q  1 tacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgatt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| ||     
T  9581704 tacctgtgggttagtaccaacataaagcaaattttccaccacctccagattagtaatgtccgaattaggtagaataatcaaacaattagttctaataatc 9581605  T
Q  101 ctccatgcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagt------agtataaaagtttagataatagttctcatctatcctct 194  Q
    |||||| ||||||| |||||||||||| ||||||||||| ||||||| ||||||||      |||||| |||||| ||||||| || |||||||||||||    
T  9581604 ctccattcatattgataattgtgagtatggtcatgggttctaaggaaagacaaagtagtgagagtatataagtttggataataattttcatctatcctct 9581505  T
Q  195 tgatcccttgattcatactcaccccaaacttcttagcaataaaagtgatgat 246  Q
    ||||||||||||||| |||||||| |||| ||||||||||||||||||||||    
T  9581504 tgatcccttgattcacactcaccctaaacctcttagcaataaaagtgatgat 9581453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 9729556 - 9729305
Alignment:
Q  1 tacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgatt 100  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| ||     
T  9729556 tacctgtggattagtaccaacataaagcaaattttccaccacctccggattagtaatgtctgaattaggtagaataatcaaacaattagttctaataatc 9729457  T
Q  101 ctccatgcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagt------agtataaaagtttagataatagttctcatctatcctct 194  Q
    |||||| ||||||| |||||||||||| ||||||||||| ||||||| ||||||||      |||||| |||||| ||||||| || |||||||||||||    
T  9729456 ctccattcatattgataattgtgagtatggtcatgggttctaaggaaagacaaagtagtgagagtatataagtttggataataattttcatctatcctct 9729357  T
Q  195 tgatcccttgattcatactcaccccaaacttcttagcaataaaagtgatgat 246  Q
    ||||||||||||||| |||||||| |||| ||||||||||||||||||||||    
T  9729356 tgatcccttgattcacactcaccctaaacctcttagcaataaaagtgatgat 9729305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 5 - 246
Target Start/End: Complemental strand, 4311525 - 4311279
Alignment:
Q  5 tgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgattctcc 104  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  4311525 tgtgggttagtaccaacgtaaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaataattctcc 4311426  T
Q  105 atgcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagt------agtataaaagtttagataatagttctcatctatcctcttgat 198  Q
    || ||||||||||||||||||||||| |||||||| |||| || ||||||||      |||||| |||| ||||||||||||| | ||||||||||||||    
T  4311425 attcatattggtaattgtgagtagggccatgggttctaagaaaggacaaagtagtgagagtatataagtctagataatagttcccctctatcctcttgat 4311326  T
Q  199 cccttgattcatactcaccccaaacttcttagcaataaaagtgatgat 246  Q
    | ||||||||| |||| ||||||||||| ||| |||||| ||||||||    
T  4311325 ctcttgattcacactc-ccccaaacttcctagaaataaaggtgatgat 4311279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 5 - 246
Target Start/End: Original strand, 8783505 - 8783752
Alignment:
Q  5 tgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgattctcc 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| ||||| || |||| |||||||    
T  8783505 tgtgggttagtaccaacataaagcaaattttccaccacctccggattagttatgtccgaattagggagaataatcaaaaaattatctgtaataattctcc 8783604  T
Q  105 atgcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagt------agtataaaagtttagataatagttctcatctatcctcttgat 198  Q
     | |||||| |||||||||||||||| |||||||| ||||||| | ||||||      |||||| |||| ||||||||||||| | ||||||| ||||||    
T  8783605 tttcatatttgtaattgtgagtagggccatgggttgtaaggaagggcaaagtagtgagagtatataagtctagataatagttcccctctatccccttgat 8783704  T
Q  199 cccttgattcatactcaccccaaacttcttagcaataaaagtgatgat 246  Q
    || |||||||| |||||||||||||||| |||||||||| ||||||||    
T  8783705 ccattgattcacactcaccccaaacttcctagcaataaaggtgatgat 8783752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 83 - 246
Target Start/End: Original strand, 14223144 - 14223313
Alignment:
Q  83 caattagctctaatgattctccatgcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagtagt------ataaaagtttagataat 176  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||      ||| |||||||||||||    
T  14223144 caattagctctaatgattctccattcatattggtaattgtgagtagggtcatgggctttaaggaatgacaaagtagtgagagtatataagtttagataat 14223243  T
Q  177 agttctcatctatcctcttgatcccttgattcatactcaccccaaacttcttagcaataaaagtgatgat 246  Q
    ||||||| ||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  14223244 agttctcctctttcctcttgatcccttgattcacactcaccccaaacttcttagcaataaaagtgatgat 14223313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 23513871 - 23513736
Alignment:
Q  1 tacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgatt 100  Q
    ||||||||||||||| ||||||||||  || ||||| ||||||||||||||||||||||||||||||||||||||||||||  |||||||  || ||| |    
T  23513871 tacctgtgggttagtgccaacataaacaaagttttctaccacctccggattagtaatgtccgaattaggtagaataatcaagtaattagcattattgact 23513772  T
Q  101 ctccatgcatattggtaattgtgagtagggtcatgg 136  Q
    |||||  ||||| |||||||||||| |||| |||||    
T  23513771 ctccactcatataggtaattgtgagaagggccatgg 23513736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 4462119 - 4462244
Alignment:
Q  1 tacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgatt 100  Q
    |||| ||||||||||||||| ||||||||||||||||||||||| ||| ||||| |||  || ||||||||||||||||||||||| |||||||||||||    
T  4462119 taccagtgggttagtaccaatataaagcaaattttccaccaccttcgggttagttatgaacggattaggtagaataatcaaacaatgagctctaatgatt 4462218  T
Q  101 ctccatgcatattggtaattgtgagt 126  Q
     || |  ||||||||| |||||||||    
T  4462219 ttctaatcatattggtcattgtgagt 4462244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 13741223 - 13741088
Alignment:
Q  1 tacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgatt 100  Q
    ||||||||| ||||| ||||||||||   | ||||| |||||||||| ||||||||||||||||||||||||||||||||| |||||| |  || ||| |    
T  13741223 tacctgtggattagtgccaacataaacatagttttctaccacctccgaattagtaatgtccgaattaggtagaataatcaagcaattatcattattgact 13741124  T
Q  101 ctccatgcatattggtaattgtgagtagggtcatgg 136  Q
    |||||  |||||||||||||||||| |||| |||||    
T  13741123 ctccactcatattggtaattgtgagaagggccatgg 13741088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 5395942 - 5395811
Alignment:
Q  1 tacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgatt 100  Q
    ||||||||||||||| |||||||||| ||| ||||| |||||||||||||||||||| || ||||||||||||||||||||  |||||||  || |||      
T  5395942 tacctgtgggttagtgccaacataaaccaagttttctaccacctccggattagtaatatctgaattaggtagaataatcaagaaattagcattattgacg 5395843  T
Q  101 ctccatgcatattggtaattgtgagtagggtc 132  Q
    |||||  ||| ||||||||||| || ||||||    
T  5395842 ctccactcattttggtaattgttagaagggtc 5395811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 12565805 - 12565670
Alignment:
Q  1 tacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgatt 100  Q
    |||| ||||||||||||||||||||| ||| ||||| |||||||||| ||||||||| || |||||||||  |||||||||  |||||||  || ||| |    
T  12565805 taccggtgggttagtaccaacataaaccaagttttctaccacctccgaattagtaatatctgaattaggttaaataatcaagaaattagcattattgact 12565706  T
Q  101 ctccatgcatattggtaattgtgagtagggtcatgg 136  Q
    |||||  ||||||||||||||| || |||| |||||    
T  12565705 ctccactcatattggtaattgttagaagggccatgg 12565670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 10439750 - 10439888
Alignment:
Q  1 tacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgatt 100  Q
    ||||||||||||||| |||||||||| ||| ||||| ||||||| | | |||||||| || ||||||||||||||||||||  ||||| |  || ||| |    
T  10439750 tacctgtgggttagtgccaacataaaccaagttttctaccaccttcagcttagtaatatctgaattaggtagaataatcaagaaattatcattattgact 10439849  T
Q  101 ctccatgcatattggtaattgtgagtagggtcatgggtt 139  Q
    |||||  |||||||||||||||||| ||||  |||||||    
T  10439850 ctccactcatattggtaattgtgagaagggctatgggtt 10439888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 29563 - 29312
Alignment:
Q  1 tacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgatt 100  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  29563 tacctgtgggttagtaccaacataaagcaaattttctaccacctccggattagtaatgtccgaattaggtagaataatcatacaattagctctaatgatt 29464  T
Q  101 ctccatgcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagt------agtataaaagtttagataatagttctcatctatcctct 194  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||      ||||||||||||||||||||||||||||||||||||||    
T  29463 ctccattcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagtagtgagagtataaaagtttagataatagttctcatctatcctct 29364  T
Q  195 tgatcccttgattcatactcaccccaaacttcttagcaataaaagtgatgat 246  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29363 tgatcccttgattcatactcaccccaaacttcttagcaataaaagtgatgat 29312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 203; Significance: 1e-111; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 20001100 - 20000852
Alignment:
Q  1 tacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgatt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20001100 tacctgtgggttagtaccaacataaagcaaattttccaccacctccagattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgatt 20001001  T
Q  101 ctccatgcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagt------agtataaaagtttagataatagttctcatctatcctct 194  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||      ||||||||||||||||||||||||||||||||||||||    
T  20001000 ctccattcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagtagtgagagtataaaagtttagataatagttctcatctatcctct 20000901  T
Q  195 tgatcccttgattcatactcaccccaaacttcttagcaataaaagtgatgat 246  Q
    ||||||||||||||| ||||||||||||   |||||||||||||||||||||    
T  20000900 tgatcccttgattcacactcaccccaaa---cttagcaataaaagtgatgat 20000852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 20040481 - 20040615
Alignment:
Q  1 tacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgatt 100  Q
    ||||||||||||||| |||||||||| | | ||||| |||||||| ||||||||||| || ||||||||||||||||||||  ||||||   || ||| |    
T  20040481 tacctgtgggttagtgccaacataaacctagttttctaccacctctggattagtaatatctgaattaggtagaataatcaagaaattagtagtattgact 20040580  T
Q  101 ctccatgcatattggtaattgtgagtagggtcatg 135  Q
    |||||  |||||||||||||||||| |||| ||||    
T  20040581 ctccactcatattggtaattgtgagaagggccatg 20040615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 21855188 - 21855323
Alignment:
Q  1 tacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgatt 100  Q
    ||||||| ||||||| ||||||||||   | ||||| ||||||| |||||||||||| || ||||||||||||||||||||  |||||||  || ||| |    
T  21855188 tacctgtaggttagtgccaacataaa---agttttctaccaccttcggattagtaatatctgaattaggtagaataatcaagaaattagcattattgact 21855284  T
Q  101 ctccatgcatattggtaattgtgagtagggtcatgggtt 139  Q
    |||||  |||||||||||||||||| ||||| |||||||    
T  21855285 ctccactcatattggtaattgtgagaagggttatgggtt 21855323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 17619543 - 17619412
Alignment:
Q  1 tacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgatt 100  Q
    ||||||||||||||| ||||||||||   | ||||| ||||||| |||||||||||| || ||||||||||||||||||||  |||||||  || ||| |    
T  17619543 tacctgtgggttagtgccaacataaa---agttttctaccaccttcggattagtaatatctgaattaggtagaataatcaagaaattagcattattgact 17619447  T
Q  101 ctccatgcatattggtaattgtgagtagggtcatg 135  Q
    |||||  |||||||| ||||||||| |||| ||||    
T  17619446 ctccactcatattggaaattgtgagaagggccatg 17619412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 181; Significance: 7e-98; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 51965 - 52216
Alignment:
Q  1 tacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| |||    
T  51965 tacctgtgggttagtaccaacataaagcaaattttccaccacctccggaatagtaatgtccgaattaggtagaatagtcaaacaattagctctaataatt 52064  T
Q  101 ctccatgcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagt------agtataaaagtttagataatagttctcatctatcctct 194  Q
    |||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||      |||||| ||||||||||||||||| || ||||||||||    
T  52065 ctccattcatattggtaattgtgagtagggtcatgggttataaggaaggacaaagtagtaagagtatataagtttagataatagttttcctctatcctct 52164  T
Q  195 tgatcccttgattcatactcaccccaaacttcttagcaataaaagtgatgat 246  Q
    ||||||||||||||| |||||||| |||| ||||||||||||||||||||||    
T  52165 tgatcccttgattcacactcaccctaaacctcttagcaataaaagtgatgat 52216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 161; Significance: 6e-86; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 23712119 - 23712370
Alignment:
Q  1 tacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgatt 100  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| ||     
T  23712119 tacctgtgggttaggaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaaaaattagttctaataatc 23712218  T
Q  101 ctccatgcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagt------agtataaaagtttagataatagttctcatctatcctct 194  Q
    |||||| |||||||||||||||||||| ||||||||||| ||||||| ||||||||      |||||| |||||| ||||||| || |||||||||||||    
T  23712219 ctccattcatattggtaattgtgagtatggtcatgggttctaaggaaagacaaagtagtgagagtatataagtttggataataattttcatctatcctct 23712318  T
Q  195 tgatcccttgattcatactcaccccaaacttcttagcaataaaagtgatgat 246  Q
    ||||||||||||||| |||||||| |||| ||||||||| ||||||||||||    
T  23712319 tgatcccttgattcacactcaccctaaacctcttagcaacaaaagtgatgat 23712370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 20446257 - 20446386
Alignment:
Q  1 tacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgatt 100  Q
    ||||||||||||||| |||||||||| ||| ||||| ||||||| |||||||||||| || ||||||||||||||||||||  |||||||  || ||| |    
T  20446257 tacctgtgggttagtgccaacataaaccaagttttctaccaccttcggattagtaatatctgaattaggtagaataatcaagaaattagcattattgact 20446356  T
Q  101 ctccatgcatattggtaattgtgagtaggg 130  Q
    |||||  |||||||||||||||||| ||||    
T  20446357 ctccactcatattggtaattgtgagaaggg 20446386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 21282322 - 21282458
Alignment:
Q  1 tacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaa-ttagctctaatgat 99  Q
    ||||||||||||||| |||||||||| ||| ||||| |||||||||||||||||||| | |||||| |||||||||||||| ||| |||||  || |||     
T  21282322 tacctgtgggttagtgccaacataaaccaagttttctaccacctccggattagtaatattcgaatttggtagaataatcaagcaatttagcgttattgac 21282421  T
Q  100 tctccatgcatattggtaattgtgagtagggtcatgg 136  Q
    ||||||  |||||||||||||||||| ||||| ||||    
T  21282422 tctccactcatattggtaattgtgagaagggttatgg 21282458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 18487475 - 18487596
Alignment:
Q  1 tacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgatt 100  Q
    ||||||||||||||| |||||||||| ||| ||||| |||||||| |||||| |||| || ||||||||||||||||||||  |||||||  || ||| |    
T  18487475 tacctgtgggttagtgccaacataaaccaagttttctaccacctcaggattaataatatctgaattaggtagaataatcaagaaattagcattattgact 18487574  T
Q  101 ctccatgcatattggtaattgt 122  Q
    |||||  |||||||||||||||    
T  18487575 ctccactcatattggtaattgt 18487596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 23602052 - 23602173
Alignment:
Q  1 tacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgatt 100  Q
    ||||||||||||||| ||||||||||   | ||||| ||||||| |||||||||||| || ||||||||||||||||||||  |||||||  || ||| |    
T  23602052 tacctgtgggttagtgccaacataaa---agttttctaccaccttcggattagtaatatctgaattaggtagaataatcaagaaattagcattattgact 23602148  T
Q  101 ctccatgcatattggtaattgtgag 125  Q
    | |||  |||||||| |||||||||    
T  23602149 cgccactcatattgggaattgtgag 23602173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 24939332 - 24939200
Alignment:
Q  1 tacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgatt 100  Q
    ||||||||||||||| ||||||||||   | ||||| ||||||| || ||||||||| || ||||||||||||||||||||  |||||||  || ||| |    
T  24939332 tacctgtgggttagtgccaacataaa---agttttctaccaccttcgaattagtaatatctgaattaggtagaataatcaagaaattagcattattgact 24939236  T
Q  101 ctccatgcatattggtaattgtgagtagggtcatgg 136  Q
    | |||  |||||||| ||||||||| |||| |||||    
T  24939235 cgccactcatattgggaattgtgagaagggccatgg 24939200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 119
Target Start/End: Complemental strand, 24218627 - 24218516
Alignment:
Q  5 tgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgattctcc 104  Q
    ||||||||||| |||||||||    | ||||| |||| ||||||||||||||| || ||||||||||||||||||||  |||||||  || ||| |||||    
T  24218627 tgtgggttagtgccaacataat---agttttctaccatctccggattagtaatatctgaattaggtagaataatcaagaaattagcattattgactctcc 24218531  T
Q  105 atgcatattggtaat 119  Q
    |  ||||||||||||    
T  24218530 actcatattggtaat 24218516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0485 (Bit Score: 154; Significance: 9e-82; HSPs: 1)
Name: scaffold0485
Description:

Target: scaffold0485; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 11316 - 11568
Alignment:
Q  1 tacctgtgggttagtaccaacataaagcaaatttt-ccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgat 99  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||| ||    
T  11316 tacctgtgggttagtaccaacataaagcaaatttttccaccacctccagattagttatgtccggattaggtagaataatcaaacaattagctctaataat 11415  T
Q  100 tctccatgcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagtag------tataaaagtttagataatagttctcatctatcctc 193  Q
    ||||||  |||||||||||||||||||| ||||||||||| ||||||| ||||||||||      |||| |||| ||||||||||||| | |||||||||    
T  11416 tctccactcatattggtaattgtgagtatggtcatgggttctaaggaaggacaaagtagtgagattatataagtctagataatagttcccctctatcctc 11515  T
Q  194 ttgatcccttgattcatactcaccccaaacttcttagcaataaaagtgatgat 246  Q
    |||||||||||||||| |||||||||||||||  |||||||||| ||||||||    
T  11516 ttgatcccttgattcacactcaccccaaactttctagcaataaaggtgatgat 11568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 24501132 - 24500997
Alignment:
Q  1 tacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgatt 100  Q
    ||||||||||||||| |||||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||  || ||| |    
T  24501132 tacctgtgggttagtgccaacataaatcaagttttctaccacctccggattagtaatgtccgaattaggtagaataatcaagcaattagcattattgact 24501033  T
Q  101 ctccatgcatattggtaattgtgagtagggtcatgg 136  Q
    |||||   ||||||||||||||||| |||| |||||    
T  24501032 ctccactaatattggtaattgtgagaagggccatgg 24500997  T

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Target: chr2; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 5 - 144
Target Start/End: Original strand, 25339522 - 25339661
Alignment:
Q  5 tgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgattctcc 104  Q
    |||| |||||| ||||||||||| |||||||||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||| ||| |||   |||    
T  25339522 tgtgagttagtgccaacataaagaaaattttccaccacctccagattagttatgtccggattaggtagaataatcaaacaattagccctattgaccttcc 25339621  T
Q  105 atgcatattggtaattgtgagtagggtcatgggttttaag 144  Q
    |  ||||||||||||||||||| ||| |||| ||| ||||    
T  25339622 actcatattggtaattgtgagttgggccatgagttctaag 25339661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0220 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0220
Description:

Target: scaffold0220; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 17 - 136
Target Start/End: Original strand, 11741 - 11860
Alignment:
Q  17 ccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgattctccatgcatattggt 116  Q
    |||||||||| ||| ||||| ||||||||| |||||||||| ||||||||||||||||||||||| ||||||||  || ||| ||||||  |||||||||    
T  11741 ccaacataaaccaagttttctaccacctccagattagtaatatccgaattaggtagaataatcaagcaattagcattattgactctccactcatattggt 11840  T
Q  117 aattgtgagtagggtcatgg 136  Q
    ||||||||| ||||||||||    
T  11841 aattgtgagaagggtcatgg 11860  T

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Target: scaffold0222 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0222
Description:

Target: scaffold0222; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 18630 - 18509
Alignment:
Q  1 tacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgatt 100  Q
    ||||||||||||||| |||||||||| ||| ||||| |||||||||||||||||||| || ||||||||||||||||||||  |||||||  || ||| |    
T  18630 tacctgtgggttagtgccaacataaaccaagttttctaccacctccggattagtaatatctgaattaggtagaataatcaagaaattagcattattgact 18531  T
Q  101 ctccatgcatattggtaattgt 122  Q
    |||||  |||||||||||||||    
T  18530 ctccactcatattggtaattgt 18509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0566 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0566
Description:

Target: scaffold0566; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 1409 - 1275
Alignment:
Q  1 tacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgatt 100  Q
    ||||||||||||||| |||||||||| ||| ||||| ||||||||| |||||||||| || ||||||||||||||||||||  |||||||   | ||| |    
T  1409 tacctgtgggttagtgccaacataaaccaagttttctaccacctccagattagtaatatctgaattaggtagaataatcaagaaattagcataattgact 1310  T
Q  101 ctccatgcatattggtaattgtgagtagggtcatg 135  Q
    |||||  ||||||||||||||| || |||||||||    
T  1309 ctccactcatattggtaattgttagaagggtcatg 1275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 32 - 136
Target Start/End: Complemental strand, 17138 - 17034
Alignment:
Q  32 ttttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgattctccatgcatattggtaattgtgagtagggt 131  Q
    ||||| |||||||| | ||||||||| ||||||||||||||||||||||| ||||||||  || ||| ||||||  |||||||||||||||||| |||||    
T  17138 ttttctaccacctctgtattagtaatatccgaattaggtagaataatcaagcaattagcattattgactctccactcatattggtaattgtgagaagggt 17039  T
Q  132 catgg 136  Q
    |||||    
T  17038 catgg 17034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0113 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 38045 - 38177
Alignment:
Q  1 tacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgatt 100  Q
    ||||||||||||||| ||||||||||   | ||||| |||||||  | ||||||||| || ||||||||||||||||||||  |||||||  || ||| |    
T  38045 tacctgtgggttagtgccaacataaa---agttttctaccaccttagaattagtaatatctgaattaggtagaataatcaagaaattagcattattgact 38141  T
Q  101 ctccatgcatattggtaattgtgagtagggtcatgg 136  Q
    | |||  |||||||| ||||||||| |||| |||||    
T  38142 cgccactcatattggaaattgtgagaagggccatgg 38177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1184 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold1184
Description:

Target: scaffold1184; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 6 - 40
Target Start/End: Original strand, 537 - 571
Alignment:
Q  6 gtgggttagtaccaacataaagcaaattttccacc 40  Q
    |||||||||||||||||||||||||||||||||||    
T  537 gtgggttagtaccaacataaagcaaattttccacc 571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 12856 - 12930
Alignment:
Q  1 tacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataat 78  Q
    ||||||||||||||| ||||||||||   | ||||| ||||||||| |||||||||| ||  | ||||||||||||||    
T  12856 tacctgtgggttagtgccaacataaa---agttttctaccacctccagattagtaatatctaatttaggtagaataat 12930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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