View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4914-Insertion-1 (Length: 473)
Name: NF4914-Insertion-1
Description: NF4914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4914-Insertion-1 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 415; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 8 - 473
Target Start/End: Complemental strand, 3294259 - 3293794
Alignment:
| Q |
8 |
tgtatgtgtatagatcccgacatttttgtataactcctattataataaatcaggaaccaatttgtcctcaatatgaaaacatcaaatgagaaccaaaatg |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
3294259 |
tgtatgtgtatagatcccgacatttttgtataactcctattataataaatcaggaaccaatttgtcctcaatatgaaaacatcaaatgaggaccaaaatg |
3294160 |
T |
|
| Q |
108 |
agtcttcactcttnnnnnnnnnnnnngtataacctgtgtcggtgcaggcagccaccacgggttcgccatggtggcggaatgggccgacacagttaaggat |
207 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3294159 |
agtcttcactcttaaaaaaataaaaagtataacctgtgtcggtgcaggccgccaccacgggttcgccatggtggcggaatgggccgacacagttaaggat |
3294060 |
T |
|
| Q |
208 |
gaggtgagtttgtgagcagagagagcggagggaggatggatcagttgtgtcagcgtggaggatggggagagacggtggtgggttgggctttgaagcccat |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3294059 |
gaggtgagtttgtgagcagagagagcggagggaggatggatcagttgtgtcagcgtggaggatggggagagacggtggtgggttgggctttgaagcccat |
3293960 |
T |
|
| Q |
308 |
tgaagagtttgggctagttttgttgggcttcggcccgcgatggctatggaagtgagaggagaggatgatgtgttgaggaatttgagagcttctttgagaa |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3293959 |
tgaagagtttgggctagttttgttgggcttcggcccgcgatggctatggaagtgagaggagaggatgatgtgttgaggaatttgagagcttctttgagaa |
3293860 |
T |
|
| Q |
408 |
cgtatttgcctgtgaaacctgatgctcctagaattattaggtcgaattttgtcgcatttggttcca |
473 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
3293859 |
cgtatttgcctgtgaaacctgatgctcctagaattattaggtcgaattttgtggcatttggttcca |
3293794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 378 - 459
Target Start/End: Original strand, 37581334 - 37581415
Alignment:
| Q |
378 |
tgttgaggaatttgagagcttctttgagaacgtatttgcctgtgaaacctgatgctcctagaattattaggtcgaattttgt |
459 |
Q |
| |
|
|||||||||| ||||||| |||||||||||| | ||| || ||||||||||||||||||| ||||| | ||||||| |||| |
|
|
| T |
37581334 |
tgttgaggaacttgagagattctttgagaacatgttttccggtgaaacctgatgctcctaagattatgatgtcgaatgttgt |
37581415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University