View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4914-Insertion-2 (Length: 129)
Name: NF4914-Insertion-2
Description: NF4914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4914-Insertion-2 |
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| [»] chr6 (4 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 118; Significance: 1e-60; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 118; E-Value: 1e-60
Query Start/End: Original strand, 8 - 129
Target Start/End: Complemental strand, 6461850 - 6461729
Alignment:
| Q |
8 |
ctaagtaagaaacctcttcagctatcaatgcaaacctcgccgcccttccaatcaatttaccataagagtaagaatcttttgtggtcatttttgatgaatc |
107 |
Q |
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| T |
6461850 |
ctaagtaagaaacctcttcagctatcaatgcaaacctcgccgcccttccaatcaatttaccataagagtaagaatcttttgtggttatttttgatgaatc |
6461751 |
T |
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| Q |
108 |
tagaccctcaacatcttttaaa |
129 |
Q |
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|||||||||||||||||||||| |
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| T |
6461750 |
tagaccctcaacatcttttaaa |
6461729 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 76; E-Value: 1e-35
Query Start/End: Original strand, 8 - 127
Target Start/End: Original strand, 6496822 - 6496941
Alignment:
| Q |
8 |
ctaagtaagaaacctcttcagctatcaatgcaaacctcgccgcccttccaatcaatttaccataagagtaagaatcttttgtggtcatttttgatgaatc |
107 |
Q |
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| T |
6496822 |
ctaagtatgaaacctcttcggctatcaatgcaaacctcgccgcccttccaatcaatttaccataagagtaagaatccttcgttgttattttcaatgaatc |
6496921 |
T |
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| Q |
108 |
tagaccctcaacatctttta |
127 |
Q |
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| T |
6496922 |
tagactgccaacatctttta |
6496941 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 6473061 - 6473000
Alignment:
| Q |
19 |
acctcttcagctatcaatgcaaacctcgccgcccttccaatcaatttaccataagagtaaga |
80 |
Q |
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| T |
6473061 |
acctcttcggctatcaatgctaacctcgcagcccttgctatcaattttccataaaagtaaga |
6473000 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 72
Target Start/End: Original strand, 6505638 - 6505693
Alignment:
| Q |
17 |
aaacctcttcagctatcaatgcaaacctcgccgcccttccaatcaatttaccataa |
72 |
Q |
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| T |
6505638 |
aaacctcttcagctatcaatgcaagcctagctgctcttgcaattaattttccataa |
6505693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 122
Target Start/End: Complemental strand, 9665319 - 9665214
Alignment:
| Q |
17 |
aaacctcttcagctatcaatgcaaacctcgccgcccttccaatcaatttaccataagagtaagaatcttttgtggtcatttttgatgaatctagaccctc |
116 |
Q |
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|||| ||||||||||||||||||| ||| || || ||| |||||||||| |||||| |||| ||| | |||| || ||| ||||||| ||||||||| |
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| T |
9665319 |
aaacgtcttcagctatcaatgcaagcctagctgctcttgcaatcaattttccataaaagtatgaagatgttgttgttattaaagatgaatttagaccctc |
9665220 |
T |
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| Q |
117 |
aacatc |
122 |
Q |
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|||||| |
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| T |
9665219 |
aacatc |
9665214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 122
Target Start/End: Complemental strand, 13536343 - 13536238
Alignment:
| Q |
17 |
aaacctcttcagctatcaatgcaaacctcgccgcccttccaatcaatttaccataagagtaagaatcttttgtggtcatttttgatgaatctagaccctc |
116 |
Q |
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|||| ||||||||||||||||||| ||| || || ||| |||||||||| |||||| |||| ||| | |||| || ||| ||||||| ||||||||| |
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| T |
13536343 |
aaacgtcttcagctatcaatgcaagcctagctgctcttgcaatcaattttccataaaagtatgaagatgttgttgttattaaagatgaatttagaccctc |
13536244 |
T |
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| Q |
117 |
aacatc |
122 |
Q |
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|||||| |
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| T |
13536243 |
aacatc |
13536238 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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