View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4914-Insertion-3 (Length: 390)
Name: NF4914-Insertion-3
Description: NF4914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4914-Insertion-3 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 8 - 390
Target Start/End: Complemental strand, 3640668 - 3640286
Alignment:
| Q |
8 |
caacccagctcaatccagccaccttattcaacccagtgcctctcattattttccgaacattattagcatcatcccacctttcagaactagcataaatatt |
107 |
Q |
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| T |
3640668 |
caacccagctcaatccagccaccttcttcaacccagtgcctctcattattttccgaacattattagcatcatcccacctttcagaactagcataaatatt |
3640569 |
T |
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| Q |
108 |
ggataacaaagcaagggtaccaacgccaacatttttatcatggatttgtcccctaatccattcagacatctcttcattaccatgaattttacaagcctga |
207 |
Q |
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| T |
3640568 |
ggataacaaagcaagagtaccaacgccaacatttttatcatggatttgtcccctaatccattcagacatctcttcattaccatgagttttacaagcctga |
3640469 |
T |
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| Q |
208 |
agaagagcactccaaataggtccctccgcttcaacaggcatacctttaaggaaagccacagcttcctcaaacaaaccagcacgtccatacatatcaacca |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
3640468 |
agaagagcactccaaataggtccctccgcttcaacaggcatacctttaaggaaagccacagcttcctcaaacaaactagcacgtccatacatatcaacca |
3640369 |
T |
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| Q |
308 |
tgcaaccataatgactcatttgcggcacaatgccataactatctttcatagctttaaagaacatcattccctcactaaccaaa |
390 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
3640368 |
tgcaaccataatgactcatttgtggcacaatgccataactatctctcatagctttaaagaacatcattccctcactaaccaaa |
3640286 |
T |
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