View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4914-Insertion-4 (Length: 181)

Name: NF4914-Insertion-4
Description: NF4914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4914-Insertion-4
NF4914-Insertion-4
[»] chr6 (21 HSPs)
chr6 (8-178)||(7119066-7119236)
chr6 (8-178)||(7131544-7131714)
chr6 (16-181)||(6402777-6402942)
chr6 (16-179)||(6585256-6585419)
chr6 (16-170)||(6603230-6603384)
chr6 (22-181)||(10579753-10579913)
chr6 (16-181)||(6432078-6432243)
chr6 (22-174)||(6415889-6416041)
chr6 (16-181)||(6423134-6423299)
chr6 (16-174)||(6594630-6594788)
chr6 (23-171)||(14818306-14818454)
chr6 (23-171)||(14820617-14820765)
chr6 (22-181)||(19632362-19632521)
chr6 (16-181)||(6394781-6394946)
chr6 (25-181)||(6409932-6410088)
chr6 (26-176)||(7994204-7994354)
chr6 (24-175)||(6589346-6589497)
chr6 (94-173)||(14802331-14802410)
chr6 (105-181)||(6596945-6597021)
chr6 (22-181)||(6426434-6426593)
chr6 (22-181)||(6586127-6586284)
[»] chr3 (5 HSPs)
chr3 (25-174)||(51113805-51113954)
chr3 (16-176)||(51764462-51764622)
chr3 (23-174)||(13470756-13470907)
chr3 (16-173)||(51120918-51121075)
chr3 (24-138)||(514788-514902)
[»] chr2 (2 HSPs)
chr2 (22-171)||(45245112-45245261)
chr2 (22-171)||(1037691-1037840)
[»] chr1 (6 HSPs)
chr1 (16-181)||(19468516-19468681)
chr1 (22-176)||(9580992-9581148)
chr1 (23-176)||(9586563-9586716)
chr1 (26-165)||(7554415-7554554)
chr1 (106-180)||(43634914-43634988)
chr1 (104-173)||(52082586-52082655)
[»] chr7 (4 HSPs)
chr7 (16-174)||(10614510-10614668)
chr7 (16-181)||(15092168-15092333)
chr7 (17-134)||(10170145-10170262)
chr7 (17-134)||(10177670-10177787)
[»] chr5 (5 HSPs)
chr5 (16-181)||(20478099-20478264)
chr5 (16-174)||(41901559-41901717)
chr5 (39-173)||(41889579-41889713)
chr5 (26-173)||(32267402-32267549)
chr5 (27-100)||(17205527-17205600)
[»] chr4 (22 HSPs)
chr4 (27-173)||(640843-640989)
chr4 (22-181)||(53761789-53761945)
chr4 (25-173)||(546839-546987)
chr4 (22-171)||(55908755-55908904)
chr4 (28-174)||(1548448-1548594)
chr4 (22-174)||(553402-553554)
chr4 (17-171)||(570269-570423)
chr4 (17-173)||(7307778-7307934)
chr4 (22-180)||(55505126-55505281)
chr4 (22-137)||(370843-370958)
chr4 (16-143)||(558415-558542)
chr4 (73-171)||(8184057-8184155)
chr4 (16-168)||(1513437-1513586)
chr4 (94-174)||(1552791-1552871)
chr4 (16-173)||(1524511-1524665)
chr4 (22-168)||(12121487-12121633)
chr4 (128-168)||(1508033-1508073)
chr4 (16-76)||(6006244-6006304)
chr4 (94-174)||(8187115-8187195)
chr4 (16-59)||(644748-644791)
chr4 (116-171)||(1519169-1519224)
chr4 (127-174)||(1600447-1600494)
[»] chr8 (7 HSPs)
chr8 (16-173)||(27922425-27922582)
chr8 (22-174)||(18315297-18315449)
chr8 (83-173)||(17628039-17628129)
chr8 (17-174)||(21235476-21235633)
chr8 (89-174)||(32151291-32151376)
chr8 (22-134)||(44736458-44736570)
chr8 (17-171)||(34936190-34936344)
[»] scaffold0295 (1 HSPs)
scaffold0295 (22-171)||(651-800)
[»] scaffold0807 (1 HSPs)
scaffold0807 (22-176)||(1486-1643)
[»] scaffold0041 (1 HSPs)
scaffold0041 (16-171)||(39101-39256)


Alignment Details
Target: chr6 (Bit Score: 163; Significance: 3e-87; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 8 - 178
Target Start/End: Original strand, 7119066 - 7119236
Alignment:
Q  8 gagaagagtctcaattgtgtgcagttttcttccacatgtttcactcctttctttgtgacataataacaatctttcagtaatagttccaaaagcccgcaac 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  7119066 gagaagagtctcaattgtgtgcagttttcttccacatgtttcacttctttttttgtgacataataacaatctttcagtaatagttccaaaagcccgcaac 7119165  T
Q  108 aattcttcgagatcacatggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctccagctgg 178  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7119166 aattcttcgagatcacatggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctccagctgg 7119236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 8 - 178
Target Start/End: Original strand, 7131544 - 7131714
Alignment:
Q  8 gagaagagtctcaattgtgtgcagttttcttccacatgtttcactcctttctttgtgacataataacaatctttcagtaatagttccaaaagcccgcaac 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  7131544 gagaagagtctcaattgtgtgcagttttcttccacatgtttcactgctttgtttgtgacataataacaatctttcagtaatagttccaaaagcccgcaac 7131643  T
Q  108 aattcttcgagatcacatggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctccagctgg 178  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7131644 aattcttcgagatcacatggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctccagctgg 7131714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 90; E-Value: 9e-44
Query Start/End: Original strand, 16 - 181
Target Start/End: Original strand, 6402777 - 6402942
Alignment:
Q  16 tctcaattgtgtgcagttttcttccacatgtttcactcctttctttgtgacataataacaatctttcagtaatagttccaaaagcccgcaacaattcttc 115  Q
    ||||| |||||| |||||||||  |||||||||| |||| || | |||||||| |||||||||| ||| |||||||| ||||||||| | |||||||||     
T  6402777 tctcagttgtgtacagttttctatcacatgtttcgctcccttttctgtgacattataacaatctctcaataatagtttcaaaagcccactacaattcttt 6402876  T
Q  116 gagatcacatggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctccagctgggga 181  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||| || || ||||||    
T  6402877 gagatcacatagagtgtttcatcatcaaccttcgtatctgacaagttcaacacttctagttgggga 6402942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 16 - 179
Target Start/End: Complemental strand, 6585419 - 6585256
Alignment:
Q  16 tctcaattgtgtgcagttttcttccacatgtttcactcctttctttgtgacataataacaatctttcagtaatagttccaaaagcccgcaacaattcttc 115  Q
    ||||| |||||||||  ||||| |||||||||||| ||| |||| ||||||||  | |||| ||||||||||||||||||||||| |  ||||| ||||     
T  6585419 tctcagttgtgtgcaaatttctaccacatgtttcagtcccttctctgtgacattttcacaacctttcagtaatagttccaaaagcgcagaacaactcttt 6585320  T
Q  116 gagatcacatggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctccagctggg 179  Q
    |||||||||| ||||||||||||||||||||| ||||||||||||||||| ||||||| |||||    
T  6585319 gagatcacatagagtgtttcatcatcaacctttgtatctgacaagttcaatacctccaactggg 6585256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 75; E-Value: 8e-35
Query Start/End: Original strand, 16 - 170
Target Start/End: Complemental strand, 6603384 - 6603230
Alignment:
Q  16 tctcaattgtgtgcagttttcttccacatgtttcactcctttctttgtgacataataacaatctttcagtaatagttccaaaagcccgcaacaattcttc 115  Q
    ||||| |||| ||||||||||| ||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||   |||| ||||     
T  6603384 tctcagttgtttgcagttttctaccacatgtttcactcctttctctgtgacataataacaatatttcaataatagttccaaaagcccaggacaactcttt 6603285  T
Q  116 gagatcacatggagtgtttcatcatcaaccttcgtatctgacaagttcaacacct 170  Q
    |||||| ||| || |||||||||||||||    ||||||| ||||| ||||||||    
T  6603284 gagatcgcatagactgtttcatcatcaacacctgtatctgccaagtccaacacct 6603230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 22 - 181
Target Start/End: Complemental strand, 10579913 - 10579753
Alignment:
Q  22 ttgtgtgcagttttcttccacatgtttcactcctttctttgtgacataataacaatctttcagtaa-tagttccaaaagcccgcaacaattcttcgagat 120  Q
    |||||||||||||||| |||||||||| ||||| |||||||||||    | ||| | ||||||||| ||||||||||||||  ||||||||||| |||||    
T  10579913 ttgtgtgcagttttctaccacatgtttaactcccttctttgtgacccttttacagtttttcagtaaatagttccaaaagccgacaacaattctttgagat 10579814  T
Q  121 cacatggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctccagctgggga 181  Q
    |  || |||||||| ||||||||| || |||| ||||||||||||||||||||||||||||    
T  10579813 cgaatagagtgttttatcatcaacttttgtatatgacaagttcaacacctccagctgggga 10579753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 70; E-Value: 8e-32
Query Start/End: Original strand, 16 - 181
Target Start/End: Original strand, 6432078 - 6432243
Alignment:
Q  16 tctcaattgtgtgcagttttcttccacatgtttcactcctttctttgtgacataataacaatctttcagtaatagttccaaaagcccgcaacaattcttc 115  Q
    ||||||||||||||| |||||| ||||| |||||||||| |||| |||||||| || |||||  | ||| ||||||| || |||||| |||||||||||     
T  6432078 tctcaattgtgtgcatttttctaccacaagtttcactcccttctgtgtgacattatcacaattgtacaggaatagttgcagaagcccacaacaattcttt 6432177  T
Q  116 gagatcacatggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctccagctgggga 181  Q
     |||||||||  |||||||||||||||||  | |||| ||||||||||||||||| ||||| ||||    
T  6432178 aagatcacataaagtgtttcatcatcaacgcttgtatttgacaagttcaacaccttcagcttggga 6432243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 65; E-Value: 8e-29
Query Start/End: Original strand, 22 - 174
Target Start/End: Original strand, 6415889 - 6416041
Alignment:
Q  22 ttgtgtgcagttttcttccacatgtttcactcctttctttgtgacataataacaatctttcagtaatagttccaaaagcccgcaacaattcttcgagatc 121  Q
    |||||||||||| ||| ||||||||||||||||    | |||||||| || ||||  ||  |||||||||| ||||||||||| ||||||||| ||||||    
T  6415889 ttgtgtgcagttctctaccacatgtttcactcccacttctgtgacattatcacaaaattcaagtaatagttgcaaaagcccgctacaattctttgagatc 6415988  T
Q  122 acatggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctccag 174  Q
    |||| ||| |||| ||||| |||||| |||| |||||||||||||||||||||    
T  6415989 acatagagagttttatcattaacctttgtatttgacaagttcaacacctccag 6416041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 16 - 181
Target Start/End: Original strand, 6423134 - 6423299
Alignment:
Q  16 tctcaattgtgtgcagttttcttccacatgtttcactcctttctttgtgacataataacaatctttcagtaatagttccaaaagcccgcaacaattcttc 115  Q
    |||||||||||||||||||  | ||||| |||||| |||||| ||||| ||||||| ||||||||  |||||||||| ||||| ||| |||||| ||||     
T  6423134 tctcaattgtgtgcagtttaataccacacgtttcagtcctttgtttgttacataatcacaatcttcaagtaatagttgcaaaatcccacaacaactcttt 6423233  T
Q  116 gagatcacatggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctccagctgggga 181  Q
    |||||| ||| |||||||| |||   |||  | |||| ||||||||||||||||||||||| ||||    
T  6423234 gagatcgcatagagtgttttatcgctaactcttgtatttgacaagttcaacacctccagcttggga 6423299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 16 - 174
Target Start/End: Complemental strand, 6594788 - 6594630
Alignment:
Q  16 tctcaattgtgtgcagttttcttccacatgtttcactcctttctttgtgacataataacaatctttcagtaatagttccaaaagcccgcaacaattcttc 115  Q
    |||||||||||||||||||||| ||||||||||  |||| | || ||||| || || ||||| ||  |||  |||||  |||||||| |||||||||||     
T  6594788 tctcaattgtgtgcagttttctaccacatgtttggctccctcctctgtgagatgatcacaattttctagttttagttgtaaaagcccacaacaattcttt 6594689  T
Q  116 gagatcacatggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctccag 174  Q
    ||||||||| | ||||| |||||||||||||  |||| |||||||| ||||||||||||    
T  6594688 gagatcacacgtagtgtctcatcatcaacctctgtatttgacaagtacaacacctccag 6594630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 23 - 171
Target Start/End: Original strand, 14818306 - 14818454
Alignment:
Q  23 tgtgtgcagttttcttccacatgtttcactcctttctttgtgacataataacaatctttcagtaatagttccaaaagcccgcaacaattcttcgagatca 122  Q
    ||||||||||||||| | ||||||||||| || |||| |||||||| || ||||| ||  ||||||| |  |||||||||  |||||||||| |||||||    
T  14818306 tgtgtgcagttttctactacatgtttcacacccttctctgtgacattattacaattttcaagtaataatcgcaaaagcccagaacaattcttggagatca 14818405  T
Q  123 catggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctc 171  Q
     ||  |||||||||| ||||||||| |||| ||| ||||||||||||||    
T  14818406 tataaagtgtttcattatcaacctttgtatttgataagttcaacacctc 14818454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 23 - 171
Target Start/End: Original strand, 14820617 - 14820765
Alignment:
Q  23 tgtgtgcagttttcttccacatgtttcactcctttctttgtgacataataacaatctttcagtaatagttccaaaagcccgcaacaattcttcgagatca 122  Q
    ||||||||||||| | ||||||||||||| || |||| |||||||| || ||| | ||  ||||||| |  ||||||||| ||||||||||| |||||||    
T  14820617 tgtgtgcagttttttaccacatgtttcacacccttctctgtgacatcattacatttttcaagtaataatcgcaaaagcccacaacaattcttggagatca 14820716  T
Q  123 catggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctc 171  Q
     ||  |||||||||| ||||||||| |||| ||| ||||||||||||||    
T  14820717 tataaagtgtttcattatcaacctttgtatttgataagttcaacacctc 14820765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 22 - 181
Target Start/End: Original strand, 19632362 - 19632521
Alignment:
Q  22 ttgtgtgcagttttcttccacatgtttcactcctttctttgtgacataataacaatctttcagtaatagttccaaaagcccgcaacaattcttcgagatc 121  Q
    |||| ||||||||||| |||| ||||||||||| |||| ||||| || |  ||||| ||||||||| |||| ||||||||| ||||||||||| ||||||    
T  19632362 ttgtttgcagttttctaccacgtgtttcactcccttctctgtgatattagcacaatttttcagtaagagttgcaaaagcccacaacaattctttgagatc 19632461  T
Q  122 acatggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctccagctgggga 181  Q
    |||   |||   |||||||||||||| ||||  ||||||| ||||||||| |||| ||||    
T  19632462 acaaaaagttgctcatcatcaacctttgtatacgacaagtccaacacctctagcttggga 19632521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 16 - 181
Target Start/End: Original strand, 6394781 - 6394946
Alignment:
Q  16 tctcaattgtgtgcagttttcttccacatgtttcactcctttctttgtgacataataacaatctttcagtaatagttccaaaagcccgcaacaattcttc 115  Q
    |||||||||||||||||||||| ||||||||| ||| || || | ||||||||  | |||||  |  |||  || || ||||||||| |||||||||||     
T  6394781 tctcaattgtgtgcagttttctaccacatgttccacacccttttctgtgacatttttacaattatcaagttgtaattgcaaaagcccacaacaattcttt 6394880  T
Q  116 gagatcacatggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctccagctgggga 181  Q
    |||||||||   || ||||||||||||||  | |||| ||||||||||||||||||||||| ||||    
T  6394881 gagatcacagaaagagtttcatcatcaacgcttgtatttgacaagttcaacacctccagctcggga 6394946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 25 - 181
Target Start/End: Original strand, 6409932 - 6410088
Alignment:
Q  25 tgtgcagttttcttccacatgtttcactcctttctttgtgacataataacaatctttcagtaatagttccaaaagcccgcaacaattcttcgagatcaca 124  Q
    |||||| |||| | |||||||||||||||| |||| |||||||| || ||| |  | ||  ||||||| ||||||||  ||||||||||| |||||||||    
T  6409932 tgtgcatttttttgccacatgtttcactcccttctgtgtgacattatcacagttgtacaaaaatagttgcaaaagccgacaacaattctttgagatcaca 6410031  T
Q  125 tggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctccagctgggga 181  Q
    |  || ||||||||||||||  | |||| |||| |||||||||||| ||||| ||||    
T  6410032 taaagagtttcatcatcaacgcttgtatttgactagttcaacaccttcagcttggga 6410088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 47; E-Value: 4e-18
Query Start/End: Original strand, 26 - 176
Target Start/End: Complemental strand, 7994354 - 7994204
Alignment:
Q  26 gtgcagttttcttccacatgtttcactcctttctttgtgacataataacaatctttcagtaatagttccaaaagcccgcaacaattcttcgagatcacat 125  Q
    |||||||||||| |||||||||||||||| | ||  || |||| || ||||  ||  |||||||||| |||||| ||  |||||||||| ||||||||||    
T  7994354 gtgcagttttctaccacatgtttcactccctcctcggtaacatcattacaaagttcaagtaatagttgcaaaagtccagaacaattctttgagatcacat 7994255  T
Q  126 ggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctccagct 176  Q
      |||||||| |||| |||| | |||| ||||| |||||||||||| ||||    
T  7994254 atagtgtttcgtcattaacccttgtatttgacatgttcaacacctctagct 7994204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 24 - 175
Target Start/End: Complemental strand, 6589497 - 6589346
Alignment:
Q  24 gtgtgcagttttcttccacatgtttcactcctttctttgtgacataataacaatctttcagtaatagttccaaaagcccgcaacaattcttcgagatcac 123  Q
    |||||||||||||| |||||||||||||||| | ||  |||||||||| ||||  ||  ||| ||| || || ||||||   |||||| || |||||||     
T  6589497 gtgtgcagttttctaccacatgtttcactccctcctccgtgacataattacaaagttgaagtgataattgcataagccctatacaattttttgagatcag 6589398  T
Q  124 atggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctccagc 175  Q
    ||  ||||||| ||||| ||| || |||| ||||||||||||||||||||||    
T  6589397 atatagtgttttatcattaacatttgtatttgacaagttcaacacctccagc 6589346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 94 - 173
Target Start/End: Original strand, 14802331 - 14802410
Alignment:
Q  94 caaaagcccgcaacaattcttcgagatcacatggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctcca 173  Q
    |||||| || ||||||||||| || ||||||| ||||||||||||||||||||| |||| |||||| |||||||| ||||    
T  14802331 caaaagaccacaacaattctttgaaatcacatagagtgtttcatcatcaacctttgtatttgacaaattcaacacttcca 14802410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 105 - 181
Target Start/End: Complemental strand, 6597021 - 6596945
Alignment:
Q  105 aacaattcttcgagatcacatggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctccagctgggga 181  Q
    |||||||||| |||||  | | |||||||||||||||||| || |||  ||||||||||||||||||||||||||||    
T  6597021 aacaattctttgagatagcgtagagtgtttcatcatcaacatttgtacttgacaagttcaacacctccagctgggga 6596945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 181
Target Start/End: Original strand, 6426434 - 6426593
Alignment:
Q  22 ttgtgtgcagttttcttccacatgtttcactcctttctttgtgacataataacaatctttcagtaatagttccaaaagcccgcaacaattcttcgagatc 121  Q
    |||||||||||||||| |||| |||||||| || ||| ||||||||   | ||||| ||  ||||||| || ||||| ||  ||||||||||| ||||||    
T  6426434 ttgtgtgcagttttctaccacttgtttcacacccttcattgtgacacctttacaattttcaagtaataattgcaaaatccgacaacaattctttgagatc 6426533  T
Q  122 acatggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctccagctgggga 181  Q
     |||  |  |||||||||||||   | || | |||||| |||||||||||||||| ||||    
T  6426534 gcataaaaagtttcatcatcaatgcttgtgtttgacaaattcaacacctccagctcggga 6426593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 181
Target Start/End: Complemental strand, 6586284 - 6586127
Alignment:
Q  22 ttgtgtgcagttttcttccacatgtttcactcctttctttgtgacataataacaatctttcagtaatagttccaaaagcccgcaacaattcttcgagatc 121  Q
    |||| |||||||||   |||||| |||||||||||||  ||||||  ||| |||| || ||||| |||||||||||||||    |||| |||| ||||||    
T  6586284 ttgtttgcagttttgcaccacatctttcactcctttc--tgtgacccaatcacaacctatcagtgatagttccaaaagcctaggacaaatctttgagatc 6586187  T
Q  122 acatggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctccagctgggga 181  Q
     ||  |||||||||||||| ||| |  || | |||||| | ||||||||| |||| ||||    
T  6586186 gcacagagtgtttcatcatgaacatctgtttttgacaaatccaacacctctagcttggga 6586127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 78; Significance: 1e-36; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 1e-36
Query Start/End: Original strand, 25 - 174
Target Start/End: Complemental strand, 51113954 - 51113805
Alignment:
Q  25 tgtgcagttttcttccacatgtttcactcctttctttgtgacataataacaatctttcagtaatagttccaaaagcccgcaacaattcttcgagatcaca 124  Q
    |||||| |||||| ||||||| |||||||| |||| ||||||||  ||||||| ||||||||| |||| ||||||||| |||||| ||||||||||||||    
T  51113954 tgtgcatttttctaccacatgcttcactcccttctctgtgacatggtaacaatttttcagtaacagttgcaaaagcccacaacaactcttcgagatcaca 51113855  T
Q  125 tggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctccag 174  Q
    | ||||||||||||||||||| | |||| ||||||||  |||||||||||    
T  51113854 tagagtgtttcatcatcaaccattgtatttgacaagtctaacacctccag 51113805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 77; E-Value: 5e-36
Query Start/End: Original strand, 16 - 176
Target Start/End: Complemental strand, 51764622 - 51764462
Alignment:
Q  16 tctcaattgtgtgcagttttcttccacatgtttcactcctttctttgtgacataataacaatctttcagtaatagttccaaaagcccgcaacaattcttc 115  Q
    |||||||||||||||||||||  |||||||||||||||| ||||   |||||| || ||||| || ||||||||||| |||||||||||||||||||||     
T  51764622 tctcaattgtgtgcagttttcaaccacatgtttcactcccttctccttgacattatcacaatgttccagtaatagttgcaaaagcccgcaacaattcttt 51764523  T
Q  116 gagatcacatggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctccagct 176  Q
    |||||| ||| |||||||| ||||||||| || |||  ||||||||  |||||||||||||    
T  51764522 gagatcgcatagagtgttttatcatcaacttttgtaaatgacaagtctaacacctccagct 51764462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 23 - 174
Target Start/End: Complemental strand, 13470907 - 13470756
Alignment:
Q  23 tgtgtgcagttttcttccacatgtttcactcctttctttgtgacataataacaatctttcagtaatagttccaaaagcccgcaacaattcttcgagatca 122  Q
    ||||||||||| ||| |||||||||||||||| |  | |||||||| || ||||  ||  |||||||||| ||||||||| ||||||||||| |||||||    
T  13470907 tgtgtgcagttctctaccacatgtttcactccctcttctgtgacattatgacaaagttcaagtaatagttgcaaaagcccacaacaattctttgagatca 13470808  T
Q  123 catggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctccag 174  Q
     || |||||||| ||||| |||||| |||| |||||||||||||||||||||    
T  13470807 tatagagtgttttatcattaacctttgtatttgacaagttcaacacctccag 13470756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 4e-18
Query Start/End: Original strand, 16 - 173
Target Start/End: Complemental strand, 51121075 - 51120918
Alignment:
Q  16 tctcaattgtgtgcagttttcttccacatgtttcactcctttctttgtgacataataacaatctttc-agtaatagttccaaaagcccgcaacaattctt 114  Q
    |||||||||||||||||||||| ||||||||||||||||||| | |||||||||  ||| | ||||| ||  | | || ||||||||| | |||| ||||    
T  51121075 tctcaattgtgtgcagttttctaccacatgtttcactcctttttgtgtgacatacaaac-agctttctagagacaattgcaaaagcccacgacaactctt 51120977  T
Q  115 cgagatcacatggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctcca 173  Q
     ||||| ||||  ||| |||||||||||||  | ||||  |||||||||||||||||||    
T  51120976 tgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctcca 51120918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000006
Query Start/End: Original strand, 24 - 138
Target Start/End: Complemental strand, 514902 - 514788
Alignment:
Q  24 gtgtgcagttttcttccacatgtttcactcctttctttgtgacataataacaatctttcagtaatagttccaaaagcccgcaacaattcttcgagatcac 123  Q
    ||||||||||||   ||||||| ||||||||  ||| ||||| |   | ||||| || ||||||||||| ||||||||| || ||| |||||||||||||    
T  514902 gtgtgcagtttttcaccacatgcttcactcccgtctctgtgataccttcacaattttgcagtaatagttgcaaaagcccacagcaactcttcgagatcac 514803  T
Q  124 atggagtgtttcatc 138  Q
    ||| |||| ||||||    
T  514802 atgaagtgcttcatc 514788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 78; Significance: 1e-36; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 1e-36
Query Start/End: Original strand, 22 - 171
Target Start/End: Complemental strand, 45245261 - 45245112
Alignment:
Q  22 ttgtgtgcagttttcttccacatgtttcactcctttctttgtgacataataacaatctttcagtaatagttccaaaagcccgcaacaattcttcgagatc 121  Q
    ||||||||| |||||| |||||||||||||||| || | |||||||| |||||| | ||||| |||||||| ||||||||| | |||| |||| ||||||    
T  45245261 ttgtgtgcaattttctaccacatgtttcactcccttatctgtgacatgataacattttttcaataatagttgcaaaagcccacgacaactctttgagatc 45245162  T
Q  122 acatggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctc 171  Q
    |||||||||||||||||||||||| | || |||||||| |||||||||||    
T  45245161 acatggagtgtttcatcatcaaccattgtctctgacaaattcaacacctc 45245112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 7e-20
Query Start/End: Original strand, 22 - 171
Target Start/End: Complemental strand, 1037840 - 1037691
Alignment:
Q  22 ttgtgtgcagttttcttccacatgtttcactcctttctttgtgacataataacaatctttcagtaatagttccaaaagcccgcaacaattcttcgagatc 121  Q
    |||||||||||||||  | ||||||||||| || |||| |||||| | || ||||| || ||| || ||||  |||||||| ||||||||||| ||||||    
T  1037840 ttgtgtgcagttttcgactacatgtttcacaccattctctgtgacttcatcacaattttccagaaacagttgtaaaagcccacaacaattctttgagatc 1037741  T
Q  122 acatggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctc 171  Q
    | || ||||||||||||||||||    |||| ||||||||| ||||||||    
T  1037740 atatagagtgtttcatcatcaacacatgtatgtgacaagttaaacacctc 1037691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 78; Significance: 1e-36; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 1e-36
Query Start/End: Original strand, 16 - 181
Target Start/End: Complemental strand, 19468681 - 19468516
Alignment:
Q  16 tctcaattgtgtgcagttttcttccacatgtttcactcctttctttgtgacataataacaatctttcagtaatagttccaaaagcccgcaacaattcttc 115  Q
    ||||| ||||| ||| ||||||| |||||||||||||||||||| |||||||| || |||| | | ||  |||| ||||||||| || ||||| |||||     
T  19468681 tctcagttgtgagcaattttctttcacatgtttcactcctttctctgtgacatcattacaaccgtccacaaataattccaaaagtccacaacagttcttt 19468582  T
Q  116 gagatcacatggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctccagctgggga 181  Q
    ||||||||||  |||||||||||||||||||| ||||||||||| |||||||||||||||| ||||    
T  19468581 gagatcacataaagtgtttcatcatcaacctttgtatctgacaacttcaacacctccagcttggga 19468516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000004
Query Start/End: Original strand, 22 - 176
Target Start/End: Original strand, 9580992 - 9581148
Alignment:
Q  22 ttgtgtgcagttttcttccacatgtttcactcctttctttgtgacataataacaatctttcagtaatagttccaaaagcccgcaacaattcttcgagatc 121  Q
    ||||||||| |||||| ||||| | |||||||| || |||||||||  ||||| |||||||||||| ||   |||||| || | ||||||||| ||||||    
T  9580992 ttgtgtgcaattttctaccacacgcttcactccattgtttgtgacaccataactatctttcagtaaaaggcacaaaagtccacgacaattctttgagatc 9581091  T
Q  122 acatggagtgtttcatcatcaac--cttcgtatctgacaagttcaacacctccagct 176  Q
    ||||  || |||||||||| |||   || |||  |||||||||||||||||| ||||    
T  9581092 acataaagcgtttcatcattaacttttttgtacatgacaagttcaacacctctagct 9581148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000004
Query Start/End: Original strand, 23 - 176
Target Start/End: Original strand, 9586563 - 9586716
Alignment:
Q  23 tgtgtgcagttttcttccacatgtttcactcctttctttgtgacataataacaatctttcagtaatagttccaaaagcccgcaacaattcttcgagatca 122  Q
    |||||||| |||||| ||||| | |||| ||| ||  ||||||||| |||||||| |||| |||| || | |||||| || | ||||||| | ||| |||    
T  9586563 tgtgtgcaattttctaccacacgcttcaatccattgcttgtgacatgataacaatttttctgtaaaagatgcaaaagtccacgacaattcattgaggtca 9586662  T
Q  123 catggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctccagct 176  Q
    |||  ||||||||||||| ||| |  |||| |||||||||||||||||| ||||    
T  9586663 cataaagtgtttcatcattaacatctgtatatgacaagttcaacacctctagct 9586716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000006
Query Start/End: Original strand, 26 - 165
Target Start/End: Original strand, 7554415 - 7554554
Alignment:
Q  26 gtgcagttttcttccacatgtttcactcctttctttgtgacataataacaatctttcagtaatagttccaaaagcccgcaacaattcttcgagatcacat 125  Q
    |||||||||||| ||||||| |||||||| || | |||||||| || |||  |||||||||| ||||  ||||| || | |||| |||| ||||||| ||    
T  7554415 gtgcagttttctaccacatgcttcactcccttttctgtgacattatcacatcctttcagtaacagttgtaaaagtccaccacaactctttgagatcatat 7554514  T
Q  126 ggagtgtttcatcatcaaccttcgtatctgacaagttcaa 165  Q
     ||||| ||||||||||||  | |||| ||| ||||||||    
T  7554515 agagtgcttcatcatcaacacttgtatatgataagttcaa 7554554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000006
Query Start/End: Original strand, 106 - 180
Target Start/End: Original strand, 43634914 - 43634988
Alignment:
Q  106 acaattcttcgagatcacatggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctccagctgggg 180  Q
    ||||||||| ||| ||||||  |||||| |||| |||||||| |||| ||||||||||||| |||| ||||||||    
T  43634914 acaattctttgaggtcacataaagtgttccatcgtcaacctttgtatatgacaagttcaacgcctctagctgggg 43634988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 104 - 173
Target Start/End: Original strand, 52082586 - 52082655
Alignment:
Q  104 caacaattcttcgagatcacatggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctcca 173  Q
    |||||| |||| ||||||||||  | ||||||||||||||  || || | ||||||||||||||||||||    
T  52082586 caacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctcca 52082655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 75; Significance: 8e-35; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 8e-35
Query Start/End: Original strand, 16 - 174
Target Start/End: Original strand, 10614510 - 10614668
Alignment:
Q  16 tctcaattgtgtgcagttttcttccacatgtttcactcctttctttgtgacataataacaatctttcagtaatagttccaaaagcccgcaacaattcttc 115  Q
    |||||||||  ||||||||||| ||||||||||||||||||  | |||||||| || | ||  ||  |||||||||| ||||||||| | ||| ||||||    
T  10614510 tctcaattgcatgcagttttctaccacatgtttcactccttcttctgtgacattatgagaaagttcaagtaatagttgcaaaagcccactacagttcttc 10614609  T
Q  116 gagatcacatggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctccag 174  Q
    |||||||||| |||||||| ||||| ||||||||||| |||||||||||||||||||||    
T  10614610 gagatcacatagagtgttttatcattaaccttcgtatttgacaagttcaacacctccag 10614668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 74; E-Value: 3e-34
Query Start/End: Original strand, 16 - 181
Target Start/End: Complemental strand, 15092333 - 15092168
Alignment:
Q  16 tctcaattgtgtgcagttttcttccacatgtttcactcctttctttgtgacataataacaatctttcagtaatagttccaaaagcccgcaacaattcttc 115  Q
    ||||||||||||||||||||||  |||||||||||||||    | |||||||| |||||||  ||  |||||||||| ||||||||| |||||||||||     
T  15092333 tctcaattgtgtgcagttttctagcacatgtttcactcccacttctgtgacattataacaaaattcaagtaatagttgcaaaagcccacaacaattcttt 15092234  T
Q  116 gagatcacatggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctccagctgggga 181  Q
    |||||| ||| |||||||| ||||| |||||| || |||||||| |||||||||||||||| ||||    
T  15092233 gagatcgcatagagtgttttatcattaacctttgtttctgacaaattcaacacctccagctcggga 15092168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 17 - 134
Target Start/End: Complemental strand, 10170262 - 10170145
Alignment:
Q  17 ctcaattgtgtgcagttttcttccacatgtttcactcctttctttgtgacataataacaatctttcagtaatagttccaaaagcccgcaacaattcttcg 116  Q
    |||| ||||| ||||||||||| |||||||||||||||||||| |||||||| || |||||  ||||  ||||||| |||||| || ||||||| ||| |    
T  10170262 ctcagttgtgagcagttttctttcacatgtttcactcctttctctgtgacatcattacaattgttcacaaatagtttcaaaagtccacaacaatactttg 10170163  T
Q  117 agatcacatggagtgttt 134  Q
    ||||||||| ||||||||    
T  10170162 agatcacatagagtgttt 10170145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 17 - 134
Target Start/End: Complemental strand, 10177787 - 10177670
Alignment:
Q  17 ctcaattgtgtgcagttttcttccacatgtttcactcctttctttgtgacataataacaatctttcagtaatagttccaaaagcccgcaacaattcttcg 116  Q
    |||| ||||| ||||||||||| |||||||||||||||||||| |||||||| || |||||  ||||  ||||||| |||||| || ||||||| ||| |    
T  10177787 ctcagttgtgagcagttttctttcacatgtttcactcctttctctgtgacatcattacaattgttcacaaatagtttcaaaagtccacaacaatactttg 10177688  T
Q  117 agatcacatggagtgttt 134  Q
    ||||||||| ||||||||    
T  10177687 agatcacatagagtgttt 10177670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 74; Significance: 3e-34; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 3e-34
Query Start/End: Original strand, 16 - 181
Target Start/End: Complemental strand, 20478264 - 20478099
Alignment:
Q  16 tctcaattgtgtgcagttttcttccacatgtttcactcctttctttgtgacataataacaatctttcagtaatagttccaaaagcccgcaacaattcttc 115  Q
    ||||| |||||||||||||||| | ||||||||| |||||||| ||||||||| ||  |||| |||||||| || || ||||||||| ||||||||| |     
T  20478264 tctcagttgtgtgcagttttctacgacatgtttcgctcctttcattgtgacattatcgcaatttttcagtagtatttgcaaaagcccacaacaattcctt 20478165  T
Q  116 gagatcacatggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctccagctgggga 181  Q
    |||||||||   | |||||| |||||||| || |||| ||||||||||||||||||||||||||||    
T  20478164 gagatcacagataatgtttcgtcatcaacatttgtatatgacaagttcaacacctccagctgggga 20478099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 16 - 174
Target Start/End: Complemental strand, 41901717 - 41901559
Alignment:
Q  16 tctcaattgtgtgcagttttcttccacatgtttcactcctttctttgtgacataataacaatctttcagtaatagttccaaaagcccgcaacaattcttc 115  Q
    ||||||||| || ||||||||| ||||||| |||||||| ||||||||||||| || ||||||||  ||| | | || |||||| || |||||| ||||     
T  41901717 tctcaattgcgtacagttttctaccacatgcttcactcccttctttgtgacatcattacaatcttgaagtgacaatttcaaaagtccacaacaactcttt 41901618  T
Q  116 gagatcacatggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctccag 174  Q
    ||||||| ||  |||| |||||||||||| || |||| |||||||||||||||||||||    
T  41901617 gagatcatataaagtgcttcatcatcaacttttgtatatgacaagttcaacacctccag 41901559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 39 - 173
Target Start/End: Complemental strand, 41889713 - 41889579
Alignment:
Q  39 ccacatgtttcactcctttctttgtgacataataacaatctttcagtaatagttccaaaagcccgcaacaattcttcgagatcacatggagtgtttcatc 138  Q
    ||||||| |||||||| ||||||||||||| |||||||| ||| ||||| | || | |||||||||||||| |||| ||||||  ||  |||||||||||    
T  41889713 ccacatgattcactcccttctttgtgacatcataacaatttttaagtaacaatttcgaaagcccgcaacaactctttgagatcttataaagtgtttcatc 41889614  T
Q  139 atcaaccttcgtatctgacaagttcaacacctcca 173  Q
    |||||| || |||| ||| ||||||||||||||||    
T  41889613 atcaacttttgtatatgataagttcaacacctcca 41889579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 26 - 173
Target Start/End: Original strand, 32267402 - 32267549
Alignment:
Q  26 gtgcagttttcttccacatgtttcactcctttctttgtgacataataacaatctttcagtaatagttccaaaagcccgcaacaattcttcgagatcacat 125  Q
    |||||||||||| | ||||| |||||||| |||||||||| || || ||||| ||| ||| | | || ||||||||| |||||| |||| ||||||| ||    
T  32267402 gtgcagttttctactacatgcttcactcccttctttgtgatatcattacaatttttaagtgacaatttcaaaagcccacaacaactctttgagatcatat 32267501  T
Q  126 ggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctcca 173  Q
      |||| ||||||||||||  | || | |||||||||||| |||||||    
T  32267502 aaagtgcttcatcatcaactattgtttgtgacaagttcaatacctcca 32267549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 27 - 100
Target Start/End: Original strand, 17205527 - 17205600
Alignment:
Q  27 tgcagttttcttccacatgtttcactcctttctttgtgacataataacaatctttcagtaatagttccaaaagc 100  Q
    ||||||||||| |||||||||||| |||||| | |||||||| || ||||| || ||||| ||| | |||||||    
T  17205527 tgcagttttctaccacatgtttcaatcctttttctgtgacatcattacaatgttccagtattagatgcaaaagc 17205600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 2e-32; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 27 - 173
Target Start/End: Original strand, 640843 - 640989
Alignment:
Q  27 tgcagttttcttccacatgtttcactcctttctttgtgacataataacaatctttcagtaatagttccaaaagcccgcaacaattcttcgagatcacatg 126  Q
    ||||||||||| ||||||| |||||||| |||||||| ||||||| |||||||| |||||| || | |||||| || |  |||||||| ||| |||| |     
T  640843 tgcagttttctaccacatgattcactcccttctttgttacataatgacaatcttccagtaacagatgcaaaagaccacggcaattctttgaggtcacgta 640942  T
Q  127 gagtgtttcatcatcaaccttcgtatctgacaagttcaacacctcca 173  Q
    |||||||||||||||||| || |||||||||||||||||||||||||    
T  640943 gagtgtttcatcatcaacgtttgtatctgacaagttcaacacctcca 640989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 8e-29
Query Start/End: Original strand, 22 - 181
Target Start/End: Complemental strand, 53761945 - 53761789
Alignment:
Q  22 ttgtgtgcagttttcttccacatgtttcactcctttctttgtgacataataacaatctttcagtaatagttccaaaagcccgcaacaattcttcgagatc 121  Q
    ||||||||||||||||||||||||||||||||| || |  ||||||| || ||||| ||||||||||| || ||||||||| | ||||||||||||||||    
T  53761945 ttgtgtgcagttttcttccacatgtttcactcccttgtccgtgacattatcacaatgtttcagtaata-ttgcaaaagcccacgacaattcttcgagatc 53761847  T
Q  122 acatggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctccagctgggga 181  Q
    |||  |||||||| ||| | ||| ||||||  ||||||||||||| |||| |||| ||||    
T  53761846 aca--gagtgttttatcgttaactttcgtaaatgacaagttcaacgcctctagcttggga 53761789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 25 - 173
Target Start/End: Original strand, 546839 - 546987
Alignment:
Q  25 tgtgcagttttcttccacatgtttcactcctttctttgtgacataataacaatctttcagtaatagttccaaaagcccgcaacaattcttcgagatcaca 124  Q
    |||||||||||||  ||||||||||||||| |||| |||||||| | |||| |||| |||||| | |||||||||||| |||||| |||| |||||||||    
T  546839 tgtgcagttttctagcacatgtttcactcccttctctgtgacatgaaaacattcttccagtaacaattccaaaagcccacaacaactctttgagatcaca 546938  T
Q  125 tggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctcca 173  Q
    | ||||||||||||||  ||  | |||  ||||||||||| ||||||||    
T  546939 tagagtgtttcatcattgacaattgtacgtgacaagttcaccacctcca 546987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 7e-20
Query Start/End: Original strand, 22 - 171
Target Start/End: Complemental strand, 55908904 - 55908755
Alignment:
Q  22 ttgtgtgcagttttcttccacatgtttcactcctttctttgtgacataataacaatctttcagtaatagttccaaaagcccgcaacaattcttcgagatc 121  Q
    |||||||||||||||  | ||||||||||| || |||| |||||| | || ||||| || ||| || ||||  |||||||| ||||||||||| ||||||    
T  55908904 ttgtgtgcagttttcgactacatgtttcacaccattctctgtgacttcatcacaattttccagaaacagttgtaaaagcccacaacaattctttgagatc 55908805  T
Q  122 acatggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctc 171  Q
    | || ||||||||||||||||||    |||| ||||||||| ||||||||    
T  55908804 atatagagtgtttcatcatcaacacatgtatgtgacaagttaaacacctc 55908755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 4e-18
Query Start/End: Original strand, 28 - 174
Target Start/End: Complemental strand, 1548594 - 1548448
Alignment:
Q  28 gcagttttcttccacatgtttcactcctttctttgtgacataataacaatctttcagtaatagttccaaaagcccgcaacaattcttcgagatcacatgg 127  Q
    |||||||||||| | |||||||||||| |||| ||||| ||  | ||||  |||  |||| |  | ||||||||| |||||| |||| |||||||||| |    
T  1548594 gcagttttcttctatatgtttcactcccttctctgtgatatttttacaacgtttttgtaacaagtgcaaaagcccacaacaactctttgagatcacattg 1548495  T
Q  128 agtgtttcatcatcaaccttcgtatctgacaagttcaacacctccag 174  Q
    ||||||||||||||||   | |||| |||||||||||||||||||||    
T  1548494 agtgtttcatcatcaatacttgtatgtgacaagttcaacacctccag 1548448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 174
Target Start/End: Original strand, 553402 - 553554
Alignment:
Q  22 ttgtgtgcagttttcttccacatgtttcactcctttctttgtgacataataacaatctttcagtaatagttccaaaagcccgcaacaattcttcgagatc 121  Q
    |||||||||||||||| ||||||| ||||||||||| | |||||||| |  |||||    ||  || |||| |||||||||  ||||| |||| || |||    
T  553402 ttgtgtgcagttttctaccacatgattcactcctttatctgtgacatcactacaataaaacaacaacagttgcaaaagcccagaacaactctttgaaatc 553501  T
Q  122 acatggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctccag 174  Q
    ||||  |||| ||||||||||||  | |||  |||||||||||||||||||||    
T  553502 acattaagtgcttcatcatcaactcttgtaaatgacaagttcaacacctccag 553554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 171
Target Start/End: Original strand, 570269 - 570423
Alignment:
Q  17 ctcaattgtgtgcagttttcttccacatgtttcactcctttctttgtgacataataacaatctttcagtaatagttccaaaagcccgcaacaattcttcg 116  Q
    |||| |||||||||||||||| ||||||| ||||| ||| | || || |||||||||||||  |  ||||| |||| ||||||||||| |||| |||| |    
T  570269 ctcagttgtgtgcagttttctaccacatgattcacgcctcttttagtaacataataacaatgctcaagtaacagttgcaaaagcccgcgacaactctttg 570368  T
Q  117 agatcacatggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctc 171  Q
    | |||| || ||||  ||| | ||||||    |||| ||||||||||||||||||    
T  570369 aaatcagatagagttcttcgttatcaactcctgtatatgacaagttcaacacctc 570423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 17 - 173
Target Start/End: Original strand, 7307778 - 7307934
Alignment:
Q  17 ctcaattgtgtgcagttttcttccacatgtttcactcctttctttgtgacataataacaatctttcagtaatagttccaaaagcccgcaacaattcttcg 116  Q
    |||| ||| |||||||||||| ||||||| |||| |||  || | ||||||  | ||||| ||| |||||| || | ||||||||  |||||| |||| |    
T  7307778 ctcagttgcgtgcagttttctaccacatgcttcaatccagtcatcgtgacaataaaacaaccttccagtaacaggtgcaaaagcctacaacaactctttg 7307877  T
Q  117 agatcacatggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctcca 173  Q
    |||||| | | |||| |||||||||||| |  |||| |||||||||||| |||||||    
T  7307878 agatcatacgtagtgcttcatcatcaacttctgtatatgacaagttcaatacctcca 7307934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 22 - 180
Target Start/End: Complemental strand, 55505281 - 55505126
Alignment:
Q  22 ttgtgtgcagttttcttccacatgtttcactcctttctttgtgacataataacaatctttcagtaatagttccaaaagcccgcaacaattcttcgagatc 121  Q
    ||||||||||||||||  ||| ||||||||||| |||| ||||||||     | || ||||| ||| |  | |||||| || | ||||||||| ||| ||    
T  55505281 ttgtgtgcagttttctaacacgtgtttcactcccttctctgtgacatcg---ctatttttcaataacaaatgcaaaagtccacgacaattctttgaggtc 55505185  T
Q  122 acatggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctccagctgggg 180  Q
    ||||  |||||| |||| |||||||| |||| |||||||||||||||||| || |||||    
T  55505184 acataaagtgttccatcgtcaacctttgtatatgacaagttcaacacctctagttgggg 55505126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 137
Target Start/End: Original strand, 370843 - 370958
Alignment:
Q  22 ttgtgtgcagttttcttccacatgtttcactcctttctttgtgacataataacaatctttcagtaatagttccaaaagcccgcaacaattcttcgagatc 121  Q
    ||||||||||||||   ||||||| ||||||||  ||||||||| |   | ||||| || ||||||||||| ||||||||  |||||| |||| ||||||    
T  370843 ttgtgtgcagtttttcaccacatgcttcactcccatctttgtgataccttcacaattttgcagtaatagttgcaaaagccgacaacaactctttgagatc 370942  T
Q  122 acatggagtgtttcat 137  Q
    ||||| |||| |||||    
T  370943 acatgaagtgcttcat 370958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 143
Target Start/End: Original strand, 558415 - 558542
Alignment:
Q  16 tctcaattgtgtgcagttttcttccacatgtttcactcctttctttgtgacataataacaatctttcagtaatagttccaaaagcccgcaacaattcttc 115  Q
    ||||| ||||||||||||||||  |||||| ||||||||||| | ||| ||  ||  ||||  ||  ||  | |||||||||||||| | |||| ||||     
T  558415 tctcatttgtgtgcagttttctagcacatgcttcactcctttatctgtaacgcaaatacaaaattgaagatacagttccaaaagcccacgacaactcttt 558514  T
Q  116 gagatcacatggagtgtttcatcatcaa 143  Q
    |||||||||||||||| |||||||||||    
T  558515 gagatcacatggagtgcttcatcatcaa 558542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.00000000006
Query Start/End: Original strand, 73 - 171
Target Start/End: Complemental strand, 8184155 - 8184057
Alignment:
Q  73 acaatctttcagtaatagttccaaaagcccgcaacaattcttcgagatcacatggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctc 171  Q
    ||||| || |||||| |||||||||||||| |||||| |||| |||||  ||| ||||| |  |||||||||  | |||| ||||||||||||||||||    
T  8184155 acaattttccagtaacagttccaaaagcccacaacaactctttgagattgcatagagtgctatatcatcaactcttgtatgtgacaagttcaacacctc 8184057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 168
Target Start/End: Complemental strand, 1513586 - 1513437
Alignment:
Q  16 tctcaattgtgtgcagttttcttccacatgtttcactcctttctttgtgacataataacaatctttcagtaatagttccaaaagcccgcaacaattcttc 115  Q
    ||||| ||||||||| ||||||  |||| | ||||||||  ||| |||||||  ||| ||| |||||||||  |||| ||||||||| | ||||  |||     
T  1513586 tctcagttgtgtgcatttttctagcacaagcttcactcccatctctgtgaca--ata-caacctttcagtatgagttgcaaaagcccacgacaacacttt 1513490  T
Q  116 gagatcacatggagtgtttcatcatcaaccttcgtatctgacaagttcaacac 168  Q
    ||||| || | |||||||||||||||||| || |||  |||||||||||||||    
T  1513489 gagattacgtagagtgtttcatcatcaacatttgtaaatgacaagttcaacac 1513437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 174
Target Start/End: Complemental strand, 1552871 - 1552791
Alignment:
Q  94 caaaagcccgcaacaattcttcgagatcacatggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctccag 174  Q
    ||||||||| | ||||||||| || ||||||| |||||||||||||| ||  || |||| |||||| |||||||| |||||    
T  1552871 caaaagcccacgacaattctttgatatcacattgagtgtttcatcattaatatttgtatgtgacaaattcaacacttccag 1552791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 16 - 173
Target Start/End: Complemental strand, 1524665 - 1524511
Alignment:
Q  16 tctcaattgtgtgcagttttcttccacatgtttcactcctttctttgtgacataataacaatctttcagtaatagttccaaaagcccgcaacaattcttc 115  Q
    ||||| ||||||||||||||||  |||||  ||||||||  ||| |||||||||| ||| |     || ||| |||| ||||||||| | |||| |||      
T  1524665 tctcagttgtgtgcagttttctatcacataattcactcccctctctgtgacataacaactacg---caataacagttgcaaaagcccacgacaactctgt 1524569  T
Q  116 gagatcacatggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctcca 173  Q
    ||||||| || ||||||||||||||||||  | |||  |||||| |||||||||||||    
T  1524568 gagatcatatagagtgtttcatcatcaacacttgtacgtgacaaattcaacacctcca 1524511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 168
Target Start/End: Complemental strand, 12121633 - 12121487
Alignment:
Q  22 ttgtgtgcagttttcttccacatgtttcactcctttctttgtgacataataacaatctttcagtaatagttccaaaagcccgcaacaattcttcgagatc 121  Q
    ||||||||| |||||| ||||||| ||||||||  ||| ||||||| || | ||   || |||| | |||| ||||||||| |  |||  ||| |||||     
T  12121633 ttgtgtgcatttttctaccacatgcttcactcccatctctgtgacaaaaaagcaccattccagtgagagttgcaaaagcccacggcaacactttgagatt 12121534  T
Q  122 acatggagtgtttcatcatcaaccttcgtatctgacaagttcaacac 168  Q
    ||   |||||||||||||||||| || |||| |||||||||||||||    
T  12121533 acggagagtgtttcatcatcaacatttgtatatgacaagttcaacac 12121487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 168
Target Start/End: Complemental strand, 1508073 - 1508033
Alignment:
Q  128 agtgtttcatcatcaaccttcgtatctgacaagttcaacac 168  Q
    ||||||||||||||||| || |||| |||||||||||||||    
T  1508073 agtgtttcatcatcaacattggtatgtgacaagttcaacac 1508033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 76
Target Start/End: Original strand, 6006244 - 6006304
Alignment:
Q  16 tctcaattgtgtgcagttttcttccacatgtttcactcctttctttgtgacataataacaa 76  Q
    |||||||||| ||||||||||| | || ||  ||||||| ||||||||||||| |||||||    
T  6006244 tctcaattgtttgcagttttctacgacttgcatcactcccttctttgtgacatcataacaa 6006304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 94 - 174
Target Start/End: Complemental strand, 8187195 - 8187115
Alignment:
Q  94 caaaagcccgcaacaattcttcgagatcacatggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctccag 174  Q
    ||||||||| |||||| |||| || ||  |||  ||||||| |||||||||  | |||| |||||||||||||||||||||    
T  8187195 caaaagcccacaacaactctttgaaattgcataaagtgttttatcatcaactcttgtatgtgacaagttcaacacctccag 8187115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 644748 - 644791
Alignment:
Q  16 tctcaattgtgtgcagttttcttccacatgtttcactcctttct 59  Q
    ||||| ||||||||| |||||  |||||||||||||||||||||    
T  644748 tctcagttgtgtgcatttttcaaccacatgtttcactcctttct 644791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 116 - 171
Target Start/End: Complemental strand, 1519224 - 1519169
Alignment:
Q  116 gagatcacatggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctc 171  Q
    |||||||||| ||||| ||  ||||||||| | |||| ||||||||||||||||||    
T  1519224 gagatcacatagagtgcttattcatcaacccttgtatgtgacaagttcaacacctc 1519169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 127 - 174
Target Start/End: Original strand, 1600447 - 1600494
Alignment:
Q  127 gagtgtttcatcatcaaccttcgtatctgacaagttcaacacctccag 174  Q
    ||||| |||||| |||||| | |||| |||||||||||||||||||||    
T  1600447 gagtgcttcatcgtcaacccttgtatatgacaagttcaacacctccag 1600494  T

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Target: chr8 (Bit Score: 58; Significance: 1e-24; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 16 - 173
Target Start/End: Original strand, 27922425 - 27922582
Alignment:
Q  16 tctcaattgtgtgcagttttcttccacatgtttcactcctttctttgtgacataataacaatctttcagtaatagttccaaaagcccgcaacaattcttc 115  Q
    ||||| ||| |||||||||||| ||||||| |||||||| |||||||||| || || ||||| ||  ||| | | || ||||||||| |||||| ||||     
T  27922425 tctcagttgagtgcagttttctaccacatggttcactcccttctttgtgaaatcattacaattttcaagtgacaatttcaaaagcccacaacaactcttt 27922524  T
Q  116 gagatcacatggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctcca 173  Q
    ||||||| ||  |||| |||||||||||| || |||| ||||||||||||||||||||    
T  27922525 gagatcatataaagtgcttcatcatcaacatttgtatatgacaagttcaacacctcca 27922582  T

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Target: chr8; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 22 - 174
Target Start/End: Complemental strand, 18315449 - 18315297
Alignment:
Q  22 ttgtgtgcagttttcttccacatgtttcactcctttctttgtgacataataacaatctttcagtaatagttccaaaagcccgcaacaattcttcgagatc 121  Q
    |||||||||||||||| ||||||  ||  ||||||||| |||||||| | ||||   || || ||| |||| ||||||||  | |||| |||| ||||||    
T  18315449 ttgtgtgcagttttctaccacatacttttctcctttctctgtgacatcacaacagcgttccaataacagttgcaaaagcctacgacaactctttgagatc 18315350  T
Q  122 acatggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctccag 174  Q
    |||| ||||| |||||||||||| || |||| |||||||||||||||||||||    
T  18315349 acatagagtgcttcatcatcaacttttgtatgtgacaagttcaacacctccag 18315297  T

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Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 83 - 173
Target Start/End: Complemental strand, 17628129 - 17628039
Alignment:
Q  83 agtaatagttccaaaagcccgcaacaattcttcgagatcacatggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctcca 173  Q
    |||||||||| ||| |||||  |||||||||| ||||||||| |||||| || |||||||||  | |||| ||||||||||||||||||||    
T  17628129 agtaatagtttcaagagcccaaaacaattctttgagatcacacggagtgctttatcatcaactctagtatgtgacaagttcaacacctcca 17628039  T

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Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 174
Target Start/End: Original strand, 21235476 - 21235633
Alignment:
Q  17 ctcaattgtgtgcagttttcttccacatgtttcactcctttctttgtgacataataacaatctttcagtaatagttccaaaagcccgcaacaattcttcg 116  Q
    |||| |||||||||||||||| ||||||| ||||| ||| | || ||||||||||||||||  |  ||||| |||| |||||||| || |||  |||| |    
T  21235476 ctcagttgtgtgcagttttctaccacatgattcacgcctcttttagtgacataataacaatgctcaagtaacagttgcaaaagcctgcgacagctctttg 21235575  T
Q  117 agatcacatggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctccag 174  Q
    | |||| || ||||  ||| | ||||||    |||| |||||||||||||||||||||    
T  21235576 aaatcaaatagagttcttcgttatcaactcctgtatatgacaagttcaacacctccag 21235633  T

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Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 89 - 174
Target Start/End: Original strand, 32151291 - 32151376
Alignment:
Q  89 agttccaaaagcccgcaacaattcttcgagatcacatggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctccag 174  Q
    |||| ||||||||| | |||| |||| |||||||||| ||||||||||||||||| | | |||  ||||||||| |||||||||||    
T  32151291 agttgcaaaagcccactacaactctttgagatcacatagagtgtttcatcatcaaaccttgtacatgacaagtttaacacctccag 32151376  T

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Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 22 - 134
Target Start/End: Original strand, 44736458 - 44736570
Alignment:
Q  22 ttgtgtgcagttttcttccacatgtttcactcctttctttgtgacataataacaatctttcagtaatagttccaaaagcccgcaacaattcttcgagatc 121  Q
    |||||| || |||||| | |||||||||||||| ||| ||||||||| ||||||||   ||| ||  |||| ||||||||| |||||| |||| ||||||    
T  44736458 ttgtgtacaattttctacaacatgtttcactcccttcgttgtgacattataacaatagctcaataccagttacaaaagcccacaacaactctttgagatc 44736557  T
Q  122 acatggagtgttt 134  Q
    |||  ||||||||    
T  44736558 acaatgagtgttt 44736570  T

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Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000006
Query Start/End: Original strand, 17 - 171
Target Start/End: Complemental strand, 34936344 - 34936190
Alignment:
Q  17 ctcaattgtgtgcagttttcttccacatgtttcactcctttctttgtgacataataacaatctttcagtaatagttccaaaagcccgcaacaattcttcg 116  Q
    |||||||||||||| |||||  ||||| | |  ||||| ||||  ||||||| | |||||| ||  |||||||||| ||||||||| | |||| |||| |    
T  34936344 ctcaattgtgtgcaattttcaaccacacgctcaactcccttctccgtgacatcacaacaattttgaagtaatagttgcaaaagcccacgacaactctttg 34936245  T
Q  117 agatcacatggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctc 171  Q
     |||  ||| |||||||| |||||||||  | |||| |||||||| |||||||||    
T  34936244 cgatggcatagagtgttttatcatcaactcttgtatatgacaagtccaacacctc 34936190  T

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Target: scaffold0295 (Bit Score: 54; Significance: 3e-22; HSPs: 1)
Name: scaffold0295
Description:

Target: scaffold0295; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 22 - 171
Target Start/End: Complemental strand, 800 - 651
Alignment:
Q  22 ttgtgtgcagttttcttccacatgtttcactcctttctttgtgacataataacaatctttcagtaatagttccaaaagcccgcaacaattcttcgagatc 121  Q
    |||||||||||||||| | ||||||||||| || |||| | |||| | || ||||| || |||||| ||||  || ||||| ||||||||||||||||||    
T  800 ttgtgtgcagttttctactacatgtttcacaccattctctatgacttcatcacaattttccagtaacagttgtaatagcccacaacaattcttcgagatc 701  T
Q  122 acatggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctc 171  Q
    | || ||||||||||||||| ||  | |||| ||||||||| ||||||||    
T  700 atatagagtgtttcatcatcgacacttgtatgtgacaagttaaacacctc 651  T

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Target: scaffold0807 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0807
Description:

Target: scaffold0807; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 22 - 176
Target Start/End: Complemental strand, 1643 - 1486
Alignment:
Q  22 ttgtgtgcagttttcttccacatgtttcactcctttctttgtgacataataacaatctttcagtaatagttccaaaagcccgcaacaattcttcgagatc 121  Q
    |||| ||||||||||  | |||| |||||||||||||| | ||||  ||| ||||| | |||||  ||||||||||| |||  |||||||||| ||||||    
T  1643 ttgtttgcagttttccacgacatctttcactcctttctctatgacccaatcacaatttatcagtcttagttccaaaatccctgaacaattctttgagatc 1544  T
Q  122 acatggagtgtttcatc---atcaaccttcgtatctgacaagttcaacacctccagct 176  Q
    |||| ||||||||||||   |||||| || |||| |||||||| ||||||||| ||||    
T  1543 acatagagtgtttcatcatcatcaacatttgtatttgacaagtccaacacctctagct 1486  T

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Target: scaffold0041 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 16 - 171
Target Start/End: Original strand, 39101 - 39256
Alignment:
Q  16 tctcaattgtgtgcagttttcttccacatgtttcactcctttctttgtgacataataacaatctttcagtaatagttccaaaagcccgcaacaattcttc 115  Q
    ||||| ||| |||||||| | | |||||||||||||||| ||| ||||||||  | |||| | || |||||  || | ||||||||| | |||| ||||     
T  39101 tctcagttgcgtgcagttgtttaccacatgtttcactcccttcattgtgacacgagaacatttttccagtatcaggtgcaaaagcccactacaactcttt 39200  T
Q  116 gagatcacatggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctc 171  Q
    ||||||||||  ||||||||||||| |||||| |||  || |||||||||||||||    
T  39201 gagatcacataaagtgtttcatcattaacctttgtaaatgtcaagttcaacacctc 39256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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