View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4914_high_4 (Length: 357)
Name: NF4914_high_4
Description: NF4914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4914_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 12 - 341
Target Start/End: Original strand, 50934674 - 50935003
Alignment:
| Q |
12 |
atagggaccaaaaacttgattaaccctatcatatatgcaaaaatgcaaacagaaaagtagaaacaattcaaactgggagcttttcaattggagcaagaca |
111 |
Q |
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| T |
50934674 |
atagggaccaaaaacttgattaatcctatcatatatgcaaaaatgcaaacagaaaagtagaaacaattcaaactgggagcttttcaattggagcaagaca |
50934773 |
T |
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| Q |
112 |
aaaagcacaaactggttttggaaatattaacccttcaataactgtttcctgcctcggaacacaagcacactgttattgaacacaaactgtgcctattgct |
211 |
Q |
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| T |
50934774 |
aaaagcacaaactggttttggaaatattaacccttcaataactgtttcctgcctcggaacacaagcacactgttattgaacacaaactgtgcctattgct |
50934873 |
T |
|
| Q |
212 |
aaaagactaaaagaagcattttccaaaagttgaagtgaagatgaatacctttgcaaaatactttcctggattagtagcacactgaattattgtcaaaagt |
311 |
Q |
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| T |
50934874 |
aaaagactaaaagaagcattttccaaaagttgaagtgaagatgaatacctttgcaaaatactttcctggattagtagcacactgaattattgtcaaaagt |
50934973 |
T |
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| Q |
312 |
gcgttaccgaaattccctgaagcttcattc |
341 |
Q |
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| T |
50934974 |
gcgttaccgaaattccctgaagcttcattc |
50935003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 229 - 342
Target Start/End: Complemental strand, 26553007 - 26552890
Alignment:
| Q |
229 |
attttccaaaagttgaagtgaagatgaat----acctttgcaaaatactttcctggattagtagcacactgaattattgtcaaaagtgcgttaccgaaat |
324 |
Q |
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| T |
26553007 |
attttcctaaagttaaagtgaagatgaatgaatacctttgcaaaatactttgctggattagtagcgcattcagttattgtcaaaagtgcgagaccgaaat |
26552908 |
T |
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| Q |
325 |
tccctgaagcttcattct |
342 |
Q |
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|||| || |||||||||| |
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| T |
26552907 |
tcccggatgcttcattct |
26552890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 218 - 342
Target Start/End: Complemental strand, 26559102 - 26558978
Alignment:
| Q |
218 |
ctaaaagaagcattttccaaaagttgaagtgaagatgaatacctttgcaaaatactttcctggattagtagcacactgaattattgtcaaaagtgcgtta |
317 |
Q |
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|||||||||||||||||| |||||||||| | || | |||||||||| ||||||||| |||||||||||||||| ||||||||||||| ||||| | |
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| T |
26559102 |
ctaaaagaagcattttcctaaagttgaagggctgagggatacctttgcgaaatactttgctggattagtagcacattgaattattgtcaccagtgctcga |
26559003 |
T |
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| Q |
318 |
ccgaaattccctgaagcttcattct |
342 |
Q |
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| T |
26559002 |
ccgaaattcccggatgtttcattct |
26558978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 254 - 342
Target Start/End: Complemental strand, 26564826 - 26564738
Alignment:
| Q |
254 |
gaatacctttgcaaaatactttcctggattagtagcacactgaattattgtcaaaagtgcgttaccgaaattccctgaagcttcattct |
342 |
Q |
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|||||||||||||||||||||| |||||||| |||||| || ||||||||| |||||||| ||| |||||||| || | |||||||| |
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| T |
26564826 |
gaatacctttgcaaaatactttgctggattatgagcacattgtattattgtccgaagtgcgtgaccaaaattccccgatgtttcattct |
26564738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 12 - 47
Target Start/End: Complemental strand, 35015232 - 35015197
Alignment:
| Q |
12 |
atagggaccaaaaacttgattaaccctatcatatat |
47 |
Q |
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||||||||||||||||| |||||||||||||||||| |
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| T |
35015232 |
atagggaccaaaaacttaattaaccctatcatatat |
35015197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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