View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4914_high_6 (Length: 236)
Name: NF4914_high_6
Description: NF4914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4914_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 85; Significance: 1e-40; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 127 - 227
Target Start/End: Complemental strand, 3519082 - 3518982
Alignment:
| Q |
127 |
ctataatatgtctgaactataaacctgatgttttagccgggaatttttctaccacaatgtgatcaaaatagcaaatgccaaaataatttgaaatgatgat |
226 |
Q |
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| T |
3519082 |
ctataatgtgtctgaactatatgcctgatgttttagccgggaatttttctaccacaatgtgatcaaagtagcaaatgccaaaataatttgaaatgatgat |
3518983 |
T |
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| Q |
227 |
g |
227 |
Q |
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| T |
3518982 |
g |
3518982 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 3519208 - 3519141
Alignment:
| Q |
1 |
ttggaggctcatttccttggaaagccactgttaactcccttggtttaatctacatgactctattgaac |
68 |
Q |
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| T |
3519208 |
ttggaggctcatttccttggaaagccactgttaactcccttggtttaatctacatgactctattgaac |
3519141 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 4 - 68
Target Start/End: Complemental strand, 3522753 - 3522689
Alignment:
| Q |
4 |
gaggctcatttccttggaaagccactgttaactcccttggtttaatctacatgactctattgaac |
68 |
Q |
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| T |
3522753 |
gaggctcatttccttggaaagccactgttaactcccttggtttaagcttcatgactctattgaac |
3522689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 3479600 - 3479533
Alignment:
| Q |
1 |
ttggaggctcatttccttggaaagccactgttaactcccttggtttaatctacatgactctattgaac |
68 |
Q |
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| T |
3479600 |
ttggaggcccatttccttggaaaaccactgttaactcccttggtttaatttacatgcctctattgaac |
3479533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 3537202 - 3537269
Alignment:
| Q |
1 |
ttggaggctcatttccttggaaagccactgttaactcccttggtttaatctacatgactctattgaac |
68 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||| |||| | ||||||||| |
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| T |
3537202 |
ttggaggctcatttccttggaaagccactgttaactcctttggtttaatctgcatgccactattgaac |
3537269 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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