View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4914_low_1 (Length: 428)
Name: NF4914_low_1
Description: NF4914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4914_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 12 - 412
Target Start/End: Original strand, 15115313 - 15115713
Alignment:
| Q |
12 |
ataggcgttccagttttcggatgtacaagagcgaaccaaggaggaatcatgtgcgaacgtgcgatgtgagcaatataacgcgcttgtcctaatcttccta |
111 |
Q |
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| T |
15115313 |
ataggcgttccagttttcggatgtacaagagcgaaccaaggaggaatcatgtgcgaacgtgcgatgtgagcaatataacgcgcttgtcctaatcttccta |
15115412 |
T |
|
| Q |
112 |
ctaaaagcactgttgtcatacctttcaatgcaccaaaagctactacatattttgcccaattcattccaactttctgaaatgcaactgagaaagctgcacc |
211 |
Q |
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| T |
15115413 |
ctaaaagcactgttgtcatacctttcaatgcaccaaaagctactacatattttgcccaattcattccaactttctgaaatgcaactgagaaagctgcacc |
15115512 |
T |
|
| Q |
212 |
tgtatctatatctgtgtatttctgcatcatgcttagtgaaagtgccatcaagcaatagataactgtgatcacagacattgaaccaatcaagcctattggt |
311 |
Q |
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| T |
15115513 |
tgtatctatatctgtgtatttctgcatcatgcttagtgaaagtgccatcaagcaatagataactgtgatcacagacattgaaccaatcaagcctattggt |
15115612 |
T |
|
| Q |
312 |
atgtcctttggcggatttttagtttcttcagccatggttgcaagactgtcaaaccctccatatgcaaaatatagaattgcagatgcttgaaatacacctt |
411 |
Q |
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| T |
15115613 |
atgtcctttggcggatttttagtttcttcagccatggttgcaagactgtcaaaccctccatatgcaaaatatagaattgcagatgcttgaaatacacctt |
15115712 |
T |
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| Q |
412 |
t |
412 |
Q |
| |
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| T |
15115713 |
t |
15115713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 254 - 354
Target Start/End: Original strand, 21597281 - 21597381
Alignment:
| Q |
254 |
tgccatcaagcaatagataactgtgatcacagacattgaaccaatcaagcctattggtatgtcctttggcggatttttagtttcttcagccatggttgca |
353 |
Q |
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| T |
21597281 |
tgccatcaaacaataaataaccgtgatcatagacattgaaccaattaaaccaataggtatatctctagaagggtttttagtttcttcagccatagttgca |
21597380 |
T |
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| Q |
354 |
a |
354 |
Q |
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| T |
21597381 |
a |
21597381 |
T |
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