View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4914_low_3 (Length: 407)

Name: NF4914_low_3
Description: NF4914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4914_low_3
NF4914_low_3
[»] chr4 (4 HSPs)
chr4 (199-381)||(40418573-40418755)
chr4 (5-127)||(40418399-40418521)
chr4 (5-78)||(39185219-39185292)
chr4 (15-95)||(2297332-2297412)
[»] chr6 (3 HSPs)
chr6 (15-84)||(5451806-5451875)
chr6 (23-80)||(5450253-5450310)
chr6 (16-95)||(23652816-23652895)
[»] chr5 (5 HSPs)
chr5 (5-83)||(8809199-8809277)
chr5 (23-95)||(35336660-35336732)
chr5 (15-85)||(14005136-14005206)
chr5 (15-84)||(1813001-1813070)
chr5 (17-89)||(27081982-27082054)
[»] chr8 (1 HSPs)
chr8 (26-95)||(30663640-30663709)
[»] chr7 (2 HSPs)
chr7 (5-118)||(2640974-2641087)
chr7 (217-281)||(2641168-2641231)
[»] chr2 (2 HSPs)
chr2 (15-84)||(44183977-44184046)
chr2 (26-84)||(7079874-7079932)
[»] chr1 (2 HSPs)
chr1 (18-95)||(22855076-22855153)
chr1 (24-90)||(14135922-14135988)
[»] chr3 (1 HSPs)
chr3 (23-89)||(23028452-23028518)
[»] scaffold0194 (1 HSPs)
scaffold0194 (5-54)||(30175-30224)


Alignment Details
Target: chr4 (Bit Score: 167; Significance: 3e-89; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 199 - 381
Target Start/End: Original strand, 40418573 - 40418755
Alignment:
Q  199 ggctgacgaaatgatggaggtgtgaaaattaaagcgctgggcttgggatgtaaaaatgaaatgatgctgaattgtaaagaaaaggctgcagttatttaat 298  Q
    |||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40418573 ggctgacgaaataatggaggtgtgaaaattaaagcgctgggctggggatgtaaaaatgaaatgatgctgaattgtaaagaaaaggctgcagttatttaat 40418672  T
Q  299 atgtttgggctataatctttgtaaattttgctataaataccctctataaaacaatgcttgccataaacaccccctgcctataa 381  Q
    |||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40418673 atgtttgggctataatctttgtgaatttttctataaataccctctataaaacaatgcttgccataaacaccccctgcctataa 40418755  T

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Target: chr4; HSP #2
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 5 - 127
Target Start/End: Original strand, 40418399 - 40418521
Alignment:
Q  5 aaactttcgcgatgaaaatcatattatattatgaaagttaaatataaattcaagctagcttcaatctgaaacacaaaaaagtatccacaaatgctagact 104  Q
    ||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  40418399 aaactttcgtgatgaaaatcatattatattatgaaagttaaatacaaattcaagctagcttcaatctgaaacacaaaaaagtatcaacaaatgctagact 40418498  T
Q  105 ctgggaaggagtagaaattatgt 127  Q
    |||||||||||||||||||||||    
T  40418499 ctgggaaggagtagaaattatgt 40418521  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 78
Target Start/End: Complemental strand, 39185292 - 39185219
Alignment:
Q  5 aaactttcgcgatgaaaatcatattatattatgaaagttaaatataaattcaagctagcttcaatctgaaacac 78  Q
    ||||||||  ||| ||| ||||||||||||||||||  |||||| |||||||    ||||||||||||||||||    
T  39185292 aaactttcatgataaaagtcatattatattatgaaatctaaatagaaattcagataagcttcaatctgaaacac 39185219  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 15 - 95
Target Start/End: Complemental strand, 2297412 - 2297332
Alignment:
Q  15 gatgaaaatcatattatattatgaaagttaaatataaattcaagctagcttcaatctgaaacacaaaaaagtatccacaaa 95  Q
    ||||||| ||||  |||| |||||||  |||||| ||||||||  |||||| |||||||||||| |||||| |||| ||||    
T  2297412 gatgaaagtcatgctatactatgaaatctaaatacaaattcaaattagctttaatctgaaacaccaaaaagcatcctcaaa 2297332  T

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Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 15 - 84
Target Start/End: Original strand, 5451806 - 5451875
Alignment:
Q  15 gatgaaaatcatattatattatgaaagttaaatataaattcaagctagcttcaatctgaaacacaaaaaa 84  Q
    ||||||| |||||||||||||||||| ||||||| ||| ||||| |||||||||||||||||||||||||    
T  5451806 gatgaaagtcatattatattatgaaatttaaatacaaaatcaagttagcttcaatctgaaacacaaaaaa 5451875  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 23 - 80
Target Start/End: Original strand, 5450253 - 5450310
Alignment:
Q  23 tcatattatattatgaaagttaaatataaattcaagctagcttcaatctgaaacacaa 80  Q
    ||||||||||||||||||  |||||| ||| ||||| |||||||||||| ||||||||    
T  5450253 tcatattatattatgaaatctaaatacaaaatcaagttagcttcaatctcaaacacaa 5450310  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 16 - 95
Target Start/End: Original strand, 23652816 - 23652895
Alignment:
Q  16 atgaaaatcatattatattatgaaagttaaatataaattcaagctagcttcaatctgaaacacaaaaaagtatccacaaa 95  Q
    |||||| |||||||||||| | ||   |||||||||||||| | || ||||||| ||||||||||||||| |||| ||||    
T  23652816 atgaaagtcatattatattgtaaactctaaatataaattcaggttaacttcaatttgaaacacaaaaaagcatcctcaaa 23652895  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 5 - 83
Target Start/End: Complemental strand, 8809277 - 8809199
Alignment:
Q  5 aaactttcgcgatgaaaatcatattatattatgaaagttaaatataaattcaagctagcttcaatctgaaacacaaaaa 83  Q
    ||||||||  ||||||| |||||||||||||||||| ||||||| ||||||| | |||| |||||||||||||| ||||    
T  8809277 aaactttcatgatgaaagtcatattatattatgaaatttaaatacaaattcaggttagcctcaatctgaaacaccaaaa 8809199  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 23 - 95
Target Start/End: Complemental strand, 35336732 - 35336660
Alignment:
Q  23 tcatattatattatgaaagttaaatataaattcaagctagcttcaatctgaaacacaaaaaagtatccacaaa 95  Q
    |||||||||||||||||| ||||||| ||||||||  |||||||||| |||||||| |||||| |||| ||||    
T  35336732 tcatattatattatgaaatttaaatacaaattcaaattagcttcaatttgaaacaccaaaaagcatcctcaaa 35336660  T

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Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 15 - 85
Target Start/End: Complemental strand, 14005206 - 14005136
Alignment:
Q  15 gatgaaaatcatattatattatgaaagttaaatataaattcaagctagcttcaatctgaaacacaaaaaag 85  Q
    ||||||| ||||||| ||||||||||  |||||||||||||||  |||||||||| |||||||| ||||||    
T  14005206 gatgaaagtcatattttattatgaaatctaaatataaattcaaattagcttcaatttgaaacaccaaaaag 14005136  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 84
Target Start/End: Original strand, 1813001 - 1813070
Alignment:
Q  15 gatgaaaatcatattatattatgaaagttaaatataaattcaagctagcttcaatctgaaacacaaaaaa 84  Q
    ||||||||||||||||||||| ||||| |||||| ||||| |   ||||| |||||| |||||| |||||    
T  1813001 gatgaaaatcatattatattacgaaagctaaatacaaattaagattagctgcaatctcaaacaccaaaaa 1813070  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 27082054 - 27081982
Alignment:
Q  17 tgaaaatcatattatattatgaaagttaaatataaattcaagctagcttcaatctgaaacacaaaaaagtatc 89  Q
    ||||| ||||||||||  ||||||  |||||||||||||| | ||  ||||||||||||||| ||||| ||||    
T  27082054 tgaaactcatattataaaatgaaatataaatataaattcatgttaaattcaatctgaaacaccaaaaaatatc 27081982  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 95
Target Start/End: Complemental strand, 30663709 - 30663640
Alignment:
Q  26 tattatattatgaaagttaaatataaattcaagctagcttcaatctgaaacacaaaaaagtatccacaaa 95  Q
    |||||||||||||||  |||||| ||||||||| |||||||||||| |||||| |||||| |||| ||||    
T  30663709 tattatattatgaaatataaatacaaattcaagttagcttcaatctaaaacaccaaaaagcatcctcaaa 30663640  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 118
Target Start/End: Original strand, 2640974 - 2641087
Alignment:
Q  5 aaactttcgcgatgaaaatcatattatattatgaaagttaaatataaattcaagctagcttcaatctgaaacacaaaaaagtatccacaaatgctagact 104  Q
    ||||||||  ||||||| |||||||||||||| | || |||||| || |||| | ||||||||||| ||||||| |||||  |||  ||||| || ||||    
T  2640974 aaactttcatgatgaaattcatattatattataagagataaatacaatttcaggttagcttcaatccgaaacaccaaaaaacatcttcaaatacttgact 2641073  T
Q  105 ctgggaaggagtag 118  Q
     |||||||||||||    
T  2641074 atgggaaggagtag 2641087  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 217 - 281
Target Start/End: Original strand, 2641168 - 2641231
Alignment:
Q  217 ggtgtgaaaattaaagcgctgggcttgggatgtaaaaatgaaatgatgctgaattgtaaagaaaa 281  Q
    |||||||| |||||||||||||||| ||||||||||||||||||| || ||||| ||||| ||||    
T  2641168 ggtgtgaatattaaagcgctgggct-gggatgtaaaaatgaaatgttgttgaatcgtaaaaaaaa 2641231  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 15 - 84
Target Start/End: Complemental strand, 44184046 - 44183977
Alignment:
Q  15 gatgaaaatcatattatattatgaaagttaaatataaattcaagctagcttcaatctgaaacacaaaaaa 84  Q
    ||||||| ||||| |||||||| |||  |||||| ||||||| | ||||||||||||||||||| |||||    
T  44184046 gatgaaagtcataatatattataaaatctaaatacaaattcaggttagcttcaatctgaaacaccaaaaa 44183977  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 26 - 84
Target Start/End: Complemental strand, 7079932 - 7079874
Alignment:
Q  26 tattatattatgaaagttaaatataaattcaagctagcttcaatctgaaacacaaaaaa 84  Q
    |||||||||||||||  |||||| |||||| || | |||||||| ||||||||||||||    
T  7079932 tattatattatgaaatctaaatacaaattcgagttcgcttcaatttgaaacacaaaaaa 7079874  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 18 - 95
Target Start/End: Original strand, 22855076 - 22855153
Alignment:
Q  18 gaaaatcatattatattatgaaagttaaatataaattcaagctagcttcaatctgaaacacaaaaaagtatccacaaa 95  Q
    |||| ||||||||||||  ||||  |||||| ||||||  | ||||||||||||||||||| ||||||||||| ||||    
T  22855076 gaaagtcatattatatttagaaatctaaatacaaattctggttagcttcaatctgaaacaccaaaaagtatcctcaaa 22855153  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 24 - 90
Target Start/End: Original strand, 14135922 - 14135988
Alignment:
Q  24 catattatattatgaaagttaaatataaattcaagctagcttcaatctgaaacacaaaaaagtatcc 90  Q
    |||||||||||||||||  |||||| ||||||| | |||||| ||| |||||||| |||||| ||||    
T  14135922 catattatattatgaaatctaaatacaaattcaggttagcttaaatttgaaacaccaaaaagcatcc 14135988  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 23 - 89
Target Start/End: Complemental strand, 23028518 - 23028452
Alignment:
Q  23 tcatattatattatgaaagttaaatataaattcaagctagcttcaatctgaaacacaaaaaagtatc 89  Q
    |||||||||||||  |||  |||| | |||||||| ||||||||||||| |||||| ||||||||||    
T  23028518 tcatattatattacaaaatctaaacacaaattcaaactagcttcaatctaaaacaccaaaaagtatc 23028452  T

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Target: scaffold0194 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 54
Target Start/End: Original strand, 30175 - 30224
Alignment:
Q  5 aaactttcgcgatgaaaatcatattatattatgaaagttaaatataaatt 54  Q
    ||||||||  ||||||| |||||||||||||||||  |||||||||||||    
T  30175 aaactttcatgatgaaagtcatattatattatgaagtttaaatataaatt 30224  T

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