View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4914_low_9 (Length: 223)
Name: NF4914_low_9
Description: NF4914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4914_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 17 - 206
Target Start/End: Original strand, 16908549 - 16908738
Alignment:
| Q |
17 |
acacatcaaccaacaatctctcattgaaaaactgttcagcaaataatggccaagtagccaatggtaaacctgcatttacactttccataatagtgttcca |
116 |
Q |
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| T |
16908549 |
acacatcaaccaacaatctctcattgaaaaactgttcagcaaacaatggccaagtagccaatggtaaacctgcatttacactttccataatagtgttcca |
16908648 |
T |
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| Q |
117 |
cccacaatgagtcaccacagctccaactgcaccatgctctagtatcagaagctgtggtgcccaaccccatatcaaatagcctttgcttct |
206 |
Q |
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| T |
16908649 |
cccacaatgagtcacaacagctccaactgcaccatgctctagtatcagaagctgtggtgcccaaccccatatcaaatagcctttgtttct |
16908738 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 17 - 201
Target Start/End: Complemental strand, 14870110 - 14869926
Alignment:
| Q |
17 |
acacatcaaccaacaatctctcattgaaaaactgttcagcaaataatggccaagtagccaatggtaaacctgcatttacactttccataatagtgttcca |
116 |
Q |
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| T |
14870110 |
acacatcaaccaacaatctctcattgaaaaactgttcagcaaacaatggccaagttgccaatgacaaacctgcatttacactttccataatagtgttcca |
14870011 |
T |
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| Q |
117 |
cccacaatgagtcaccacagctccaactgcaccatgctctagtatcagaagctgtggtgcccaaccccatatcaaatagcctttg |
201 |
Q |
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| T |
14870010 |
gccacagtgagtcaccactgctccaactgcagcatgctctagtatcagcagttgtggtgcccaaccccatatcaaatagcctttg |
14869926 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 35 - 200
Target Start/End: Original strand, 5994814 - 5994979
Alignment:
| Q |
35 |
tctcattgaaaaactgttcagcaaataatggccaagtagccaatggtaaacctgcatttacactttccataatagtgttccacccacaatgagtcaccac |
134 |
Q |
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||||||||||||| |||||||||||||| ||||| || | |||||| || |||| |||||||| | || ||||||||| ||||||||| |||| | |
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| T |
5994814 |
tctcattgaaaaaatgttcagcaaataaaggccatgtcactgttggtaacccaacattcacactttcaacaacagtgttccaaccacaatgactcactaa |
5994913 |
T |
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| Q |
135 |
agctccaactgcaccatgctctagtatcagaagctgtggtgcccaaccccatatcaaatagccttt |
200 |
Q |
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| T |
5994914 |
ccctccaattgcatgattctcaagtatcaaaagctgtggtgcccatccccaaatcaaatagccttt |
5994979 |
T |
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