View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4915-Insertion-1 (Length: 925)

Name: NF4915-Insertion-1
Description: NF4915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4915-Insertion-1
NF4915-Insertion-1
[»] chr5 (4 HSPs)
chr5 (8-438)||(9032330-9032760)
chr5 (511-925)||(9031844-9032258)
chr5 (667-722)||(28322234-28322289)
chr5 (786-843)||(30080503-30080560)
[»] chr4 (7 HSPs)
chr4 (785-847)||(37496703-37496765)
chr4 (656-720)||(54098181-54098247)
chr4 (785-843)||(44362665-44362723)
chr4 (808-847)||(11797626-11797665)
chr4 (792-843)||(13307883-13307934)
chr4 (660-719)||(46102547-46102606)
chr4 (786-843)||(13117429-13117486)
[»] chr6 (6 HSPs)
chr6 (785-886)||(19369816-19369918)
chr6 (791-843)||(6751884-6751936)
chr6 (785-837)||(10031569-10031621)
chr6 (657-722)||(10764087-10764152)
chr6 (808-843)||(785457-785492)
chr6 (786-839)||(5579654-5579707)
[»] chr2 (4 HSPs)
chr2 (787-847)||(14373425-14373485)
chr2 (787-843)||(43586007-43586063)
chr2 (672-714)||(15936343-15936385)
chr2 (790-839)||(13501084-13501133)
[»] chr8 (6 HSPs)
chr8 (674-721)||(24362323-24362370)
chr8 (656-722)||(30630590-30630655)
chr8 (787-843)||(27733848-27733904)
chr8 (786-845)||(42874522-42874581)
chr8 (786-839)||(26915246-26915299)
chr8 (786-843)||(31548295-31548352)
[»] chr3 (6 HSPs)
chr3 (667-722)||(9198641-9198696)
chr3 (656-697)||(3492754-3492795)
chr3 (656-697)||(3496448-3496489)
chr3 (786-843)||(49179717-49179774)
chr3 (656-722)||(14782857-14782923)
chr3 (660-722)||(21768592-21768654)
[»] scaffold0024 (1 HSPs)
scaffold0024 (786-847)||(18106-18167)
[»] chr7 (4 HSPs)
chr7 (786-843)||(1885573-1885630)
chr7 (787-843)||(5937423-5937479)
chr7 (787-843)||(22801743-22801799)
chr7 (808-843)||(25956467-25956502)
[»] scaffold0314 (1 HSPs)
scaffold0314 (791-843)||(8953-9005)
[»] chr1 (1 HSPs)
chr1 (666-723)||(9656774-9656831)


Alignment Details
Target: chr5 (Bit Score: 399; Significance: 0; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 8 - 438
Target Start/End: Complemental strand, 9032760 - 9032330
Alignment:
Q  8 gtcttccgccgtggaatcaagtagttcgcggcggatcggagtctatcgccgccgttcccgccgtttctttatcggaggaatcttttccgattgtagctgc 107  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  9032760 gtcttccgccgtggaatcaagtagttcgcggcgaatcggagtctatcgccgccgttcccgccgtttctttatcggaggaatcttttccgattgtaactgc 9032661  T
Q  108 tccggtggatgattctacctctgctgaagtgatctccgataacgcagataacggaggtgagcgcaatggtggtactggtaagagacctgcttggaatcgg 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9032660 tccggtggatgattctacctctgctgaagtgatctccgataacgcagataacggaggtgagcgcaatggtggtactggtaagagacctgcttggaatcgg 9032561  T
Q  208 tcttccggcaatggcggtgtttcggaggttcagccggtgatggatgcacactcgtggcttgctttatctgattctgctcgaggttctacgaaatcggagt 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  9032560 tcttccggcaatggcggtgtttcggaggttcagccggtgatggatgcacactcgtggcctgctttatctgattctgctcgaggttctacgaaatcggagt 9032461  T
Q  308 cgtcgaagggtttgttagatggatcttctgtttctccatggcaggtttgtttctgttgcgattcactatagtatttatgttaatacgatttatgatacat 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  9032460 cgtcgaagggtttgttagatggatcttctgtttctccatggcaggtttgtttctgttgcgattcactatagtatttatgttaatacgatttataatacat 9032361  T
Q  408 atggtttcaacgatttgtacaatttactata 438  Q
    | | |||||| |||||||||| |||||||||    
T  9032360 acgatttcaatgatttgtacagtttactata 9032330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 511 - 925
Target Start/End: Complemental strand, 9032258 - 9031844
Alignment:
Q  511 tatgaaattgaattcattgatggtatcatgcataataatgattgtagtgaatttcagttggttaggatcagtatgtattgcatgctatgttaaactaaat 610  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||    
T  9032258 tatgaaattgaattcattgatggtatcatgcataataatgattgtagtgaatttcagtaggttaggatcagtatgtattgcatgttatgttaaactaaat 9032159  T
Q  611 caacagtggatacgcctttaccttatgcataatactgttaagaaccactgacatggacacgtcgacactagtaaaaatttgaaaaaaggaattatttgaa 710  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9032158 caacagtggatacgcctttaccttatgcataatactgttacgaaccactgacatggacacgtcgacactagtaaaaatttgaaaaaaggaattatttgaa 9032059  T
Q  711 tgtaatcacatgatatgtttgctatgaagcacgggacacaaacacactgacatggacacggacaccagatacggtgacaccgataaatttttgagggaat 810  Q
    ||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  9032058 tgtaatcacatgatatgttggctatgaagcac-ggacacaaacacactgacatggacacggacaccagatacggtgacaccgataaatttttgaggaaat 9031960  T
Q  811 gacataattcaatctaatcac--aagtgtcggtgttgtggtcaccaggacacggcttcaatcagaaagtgtccgtgc-acagattgtgtcggtggtataa 907  Q
    |||||||||||||||||||||  ||||||||||||||| |||||||||||||| |||||||||| |||||||||||| |||||||||||||||||||||     
T  9031959 gacataattcaatctaatcacaaaagtgtcggtgttgt-gtcaccaggacacgccttcaatcag-aagtgtccgtgcaacagattgtgtcggtggtatag 9031862  T
Q  908 agttttaggatcactttt 925  Q
    ||||||||| ||||||||    
T  9031861 agttttagggtcactttt 9031844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 667 - 722
Target Start/End: Original strand, 28322234 - 28322289
Alignment:
Q  667 acacgtcgacactagtaaaaatttgaaaaaaggaattatttgaatgtaatcacatg 722  Q
    |||||||||||||||| | ||||||| |||| |||||| |||||||||||||||||    
T  28322234 acacgtcgacactagtgataatttgagaaaatgaattaattgaatgtaatcacatg 28322289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 786 - 843
Target Start/End: Complemental strand, 30080560 - 30080503
Alignment:
Q  786 gacaccgataaatttttgagggaatgacataattcaatctaatcacaagtgtcggtgt 843  Q
    ||||| |||||| |||||||  |||||||||||||||| ||||||||||| |||||||    
T  30080560 gacactgataaaattttgagaaaatgacataattcaatgtaatcacaagtatcggtgt 30080503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 2e-17; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 785 - 847
Target Start/End: Original strand, 37496703 - 37496765
Alignment:
Q  785 tgacaccgataaatttttgagggaatgacataattcaatctaatcacaagtgtcggtgttgtg 847  Q
    |||||||||||| ||||||||  |||||||||||||||| |||||||||||||||||||||||    
T  37496703 tgacaccgataattttttgagaaaatgacataattcaatgtaatcacaagtgtcggtgttgtg 37496765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 656 - 720
Target Start/End: Original strand, 54098181 - 54098247
Alignment:
Q  656 cactgacatggacacgtcgacactagtaaaaatttg--aaaaaaggaattatttgaatgtaatcaca 720  Q
    |||||||||| |||||| ||||||||||||||||||  |||||| |||||| |||| ||||||||||    
T  54098181 cactgacatgaacacgttgacactagtaaaaatttgttaaaaaatgaattaattgattgtaatcaca 54098247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 785 - 843
Target Start/End: Original strand, 44362665 - 44362723
Alignment:
Q  785 tgacaccgataaatttttgagggaatgacataattcaatctaatcacaagtgtcggtgt 843  Q
    ||||||||||||| |||||||  |||||||||||| ||| ||||||||||||| |||||    
T  44362665 tgacaccgataaaattttgagaaaatgacataatttaatgtaatcacaagtgttggtgt 44362723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 808 - 847
Target Start/End: Complemental strand, 11797665 - 11797626
Alignment:
Q  808 aatgacataattcaatctaatcacaagtgtcggtgttgtg 847  Q
    |||||||||||| ||| |||||||||||||||||||||||    
T  11797665 aatgacataatttaatgtaatcacaagtgtcggtgttgtg 11797626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 792 - 843
Target Start/End: Original strand, 13307883 - 13307934
Alignment:
Q  792 gataaatttttgagggaatgacataattcaatctaatcacaagtgtcggtgt 843  Q
    |||||| |||||||  |||||||||||||||| ||||||||||||| |||||    
T  13307883 gataaaattttgagaaaatgacataattcaatgtaatcacaagtgttggtgt 13307934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 660 - 719
Target Start/End: Complemental strand, 46102606 - 46102547
Alignment:
Q  660 gacatggacacgtcgacactagtaaaaatttgaaaaaaggaattatttgaatgtaatcac 719  Q
    ||||||||||||||||||||||| | | ||||||||   ||||| |||||||||||||||    
T  46102606 gacatggacacgtcgacactagtgatagtttgaaaacgtgaattgtttgaatgtaatcac 46102547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 786 - 843
Target Start/End: Original strand, 13117429 - 13117486
Alignment:
Q  786 gacaccgataaatttttgagggaatgacataattcaatctaatcacaagtgtcggtgt 843  Q
    |||||| ||||| ||| |||  ||||||| |||||||| |||||||||||||||||||    
T  13117429 gacaccaataaaatttggagaaaatgacaaaattcaatgtaatcacaagtgtcggtgt 13117486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 4e-16; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 785 - 886
Target Start/End: Original strand, 19369816 - 19369918
Alignment:
Q  785 tgacaccgataaatttttgagggaatgacataattcaatctaatcacaagtgtcggtgt--tgtggtcaccaggacacggcttcaatcagaaagtgtccg 882  Q
    |||||| |||||| |||||||  |||||||||||||||| |||||||||||||||||||  ||| | ||||  |||||| |||||||||| |||||||||    
T  19369816 tgacacggataaaattttgagaaaatgacataattcaatgtaatcacaagtgtcggtgtcgtgtcgacaccgagacacgccttcaatcag-aagtgtccg 19369914  T
Q  883 tgca 886  Q
    ||||    
T  19369915 tgca 19369918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 791 - 843
Target Start/End: Complemental strand, 6751936 - 6751884
Alignment:
Q  791 cgataaatttttgagggaatgacataattcaatctaatcacaagtgtcggtgt 843  Q
    ||||||| |||||||  |||||||||||||||| |||||||||||||||||||    
T  6751936 cgataaaattttgagaaaatgacataattcaatgtaatcacaagtgtcggtgt 6751884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 785 - 837
Target Start/End: Original strand, 10031569 - 10031621
Alignment:
Q  785 tgacaccgataaatttttgagggaatgacataattcaatctaatcacaagtgt 837  Q
    ||||||||||||| |||||||  |||||||||||||||| |||||||||||||    
T  10031569 tgacaccgataaaattttgagaaaatgacataattcaatgtaatcacaagtgt 10031621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 657 - 722
Target Start/End: Complemental strand, 10764152 - 10764087
Alignment:
Q  657 actgacatggacacgtcgacactagtaaaaatttgaaaaaaggaattatttgaatgtaatcacatg 722  Q
    ||||||||| ||| || |||||| ||||||||||||||||| |||||| ||||| |||||| ||||    
T  10764152 actgacatgaacatgttgacactggtaaaaatttgaaaaaatgaattaattgaacgtaatcgcatg 10764087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 808 - 843
Target Start/End: Complemental strand, 785492 - 785457
Alignment:
Q  808 aatgacataattcaatctaatcacaagtgtcggtgt 843  Q
    |||||||||||||||| |||||||||||||||||||    
T  785492 aatgacataattcaatgtaatcacaagtgtcggtgt 785457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 786 - 839
Target Start/End: Original strand, 5579654 - 5579707
Alignment:
Q  786 gacaccgataaatttttgagggaatgacataattcaatctaatcacaagtgtcg 839  Q
    |||||||||||| |||||||  ||||||||| |||||| || ||||||||||||    
T  5579654 gacaccgataaaattttgagaaaatgacatagttcaatgtagtcacaagtgtcg 5579707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 787 - 847
Target Start/End: Complemental strand, 14373485 - 14373425
Alignment:
Q  787 acaccgataaatttttgagggaatgacataattcaatctaatcacaagtgtcggtgttgtg 847  Q
    ||||| ||||| |||||| | |||||||||||||||| |||||||| ||||||||||||||    
T  14373485 acaccaataaaattttgacgcaatgacataattcaatgtaatcacatgtgtcggtgttgtg 14373425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 787 - 843
Target Start/End: Complemental strand, 43586063 - 43586007
Alignment:
Q  787 acaccgataaatttttgagggaatgacataattcaatctaatcacaagtgtcggtgt 843  Q
    |||| |||||| |||||||  |||||||||||||||| |||||||||||||||||||    
T  43586063 acacagataaaattttgagaaaatgacataattcaatgtaatcacaagtgtcggtgt 43586007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 672 - 714
Target Start/End: Complemental strand, 15936385 - 15936343
Alignment:
Q  672 tcgacactagtaaaaatttgaaaaaaggaattatttgaatgta 714  Q
    |||||||||||| ||||||||||||| |||||| |||||||||    
T  15936385 tcgacactagtacaaatttgaaaaaatgaattaattgaatgta 15936343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 790 - 839
Target Start/End: Complemental strand, 13501133 - 13501084
Alignment:
Q  790 ccgataaatttttgagggaatgacataattcaatctaatcacaagtgtcg 839  Q
    |||||||| |||| ||  |||||||||||||||| |||||||||||||||    
T  13501133 ccgataaaattttaagaaaatgacataattcaatgtaatcacaagtgtcg 13501084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000009; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 674 - 721
Target Start/End: Original strand, 24362323 - 24362370
Alignment:
Q  674 gacactagtaaaaatttgaaaaaaggaattatttgaatgtaatcacat 721  Q
    ||||| |||||||||||||||||| |||||| ||||||||||||||||    
T  24362323 gacacaagtaaaaatttgaaaaaatgaattaattgaatgtaatcacat 24362370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 656 - 722
Target Start/End: Complemental strand, 30630655 - 30630590
Alignment:
Q  656 cactgacatggacacgtcgacactagtaaaaatttgaaaaaaggaattatttgaatgtaatcacatg 722  Q
    |||||||||  ||||||||||||| ||||| ||||||||||| ||||||  ||||||||||||||||    
T  30630655 cactgacataaacacgtcgacact-gtaaatatttgaaaaaatgaattaagtgaatgtaatcacatg 30630590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 787 - 843
Target Start/End: Original strand, 27733848 - 27733904
Alignment:
Q  787 acaccgataaatttttgagggaatgacataattcaatctaatcacaagtgtcggtgt 843  Q
    ||||||||||| |||||||  ||||| |||||||||| ||||||||||||| |||||    
T  27733848 acaccgataaaattttgagaaaatgatataattcaatgtaatcacaagtgttggtgt 27733904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 786 - 845
Target Start/End: Original strand, 42874522 - 42874581
Alignment:
Q  786 gacaccgataaatttttgagggaatgacataattcaatctaatcacaagtgtcggtgttg 845  Q
    ||||||| |||  |||||||  |||||||||||||||| |||||||||||||| ||||||    
T  42874522 gacaccgttaacattttgagaaaatgacataattcaatgtaatcacaagtgtcagtgttg 42874581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 786 - 839
Target Start/End: Complemental strand, 26915299 - 26915246
Alignment:
Q  786 gacaccgataaatttttgagggaatgacataattcaatctaatcacaagtgtcg 839  Q
    ||||| |||||| |||||||  |||||||||||| ||| |||||||||||||||    
T  26915299 gacacggataaaattttgagaaaatgacataatttaatgtaatcacaagtgtcg 26915246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 786 - 843
Target Start/End: Complemental strand, 31548352 - 31548295
Alignment:
Q  786 gacaccgataaatttttgagggaatgacataattcaatctaatcacaagtgtcggtgt 843  Q
    ||||||||||| | |||||   |||||||||||||||| |||||||| ||||||||||    
T  31548352 gacaccgataattatttgataaaatgacataattcaatgtaatcacatgtgtcggtgt 31548295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000009; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 667 - 722
Target Start/End: Complemental strand, 9198696 - 9198641
Alignment:
Q  667 acacgtcgacactagtaaaaatttgaaaaaaggaattatttgaatgtaatcacatg 722  Q
    |||||| |||||||||||||||||||||||| |||||| |||||  ||||||||||    
T  9198696 acacgtggacactagtaaaaatttgaaaaaatgaattaattgaacataatcacatg 9198641  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 656 - 697
Target Start/End: Complemental strand, 3492795 - 3492754
Alignment:
Q  656 cactgacatggacacgtcgacactagtaaaaatttgaaaaaa 697  Q
    |||||||||| ||||||||||||| |||||||||||||||||    
T  3492795 cactgacatgtacacgtcgacacttgtaaaaatttgaaaaaa 3492754  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 656 - 697
Target Start/End: Complemental strand, 3496489 - 3496448
Alignment:
Q  656 cactgacatggacacgtcgacactagtaaaaatttgaaaaaa 697  Q
    |||||||||| ||||||||||||| |||||||||||||||||    
T  3496489 cactgacatgtacacgtcgacacttgtaaaaatttgaaaaaa 3496448  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 786 - 843
Target Start/End: Complemental strand, 49179774 - 49179717
Alignment:
Q  786 gacaccgataaatttttgagggaatgacataattcaatctaatcacaagtgtcggtgt 843  Q
    |||||||||||| |||||||  | ||||||||||| || |||||||||||||||||||    
T  49179774 gacaccgataaaattttgagaaagtgacataattcgatgtaatcacaagtgtcggtgt 49179717  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 656 - 722
Target Start/End: Complemental strand, 14782923 - 14782857
Alignment:
Q  656 cactgacatggacacgtcgacactagtaaaaatttgaaaaaaggaattatttgaatgtaatcacatg 722  Q
    |||||||||  ||| || || ||| ||||||||||||||||| |||||| ||||| |||||||||||    
T  14782923 cactgacataaacatgttgatactggtaaaaatttgaaaaaatgaattaattgaacgtaatcacatg 14782857  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 660 - 722
Target Start/End: Original strand, 21768592 - 21768654
Alignment:
Q  660 gacatggacacgtcgacactagtaaaaatttgaaaaaaggaattatttgaatgtaatcacatg 722  Q
    ||||| |||||||||| ||| |||| ||||||| |||| |||||||||||| |||| ||||||    
T  21768592 gacattgacacgtcgatactggtaataatttgagaaaatgaattatttgaacgtaaccacatg 21768654  T

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Target: scaffold0024 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 786 - 847
Target Start/End: Complemental strand, 18167 - 18106
Alignment:
Q  786 gacaccgataaatttttgagggaatgacataattcaatctaatcacaagtgtcggtgttgtg 847  Q
    |||||||||||| |||||||  ||| |||||||||||| ||||| ||||||| |||||||||    
T  18167 gacaccgataaaattttgagaaaataacataattcaatgtaatcgcaagtgttggtgttgtg 18106  T

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Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 786 - 843
Target Start/End: Original strand, 1885573 - 1885630
Alignment:
Q  786 gacaccgataaatttttgagggaatgacataattcaatctaatcacaagtgtcggtgt 843  Q
    ||||| |||||| ||||||   |||||||||||||||| |||||||||||||||||||    
T  1885573 gacacggataaaattttgaaaaaatgacataattcaatgtaatcacaagtgtcggtgt 1885630  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 787 - 843
Target Start/End: Complemental strand, 5937479 - 5937423
Alignment:
Q  787 acaccgataaatttttgagggaatgacataattcaatctaatcacaagtgtcggtgt 843  Q
    |||| |||||| |||||||  |||||||||||||||| |||||||||||||| ||||    
T  5937479 acacggataaaattttgagaaaatgacataattcaatgtaatcacaagtgtctgtgt 5937423  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 787 - 843
Target Start/End: Complemental strand, 22801799 - 22801743
Alignment:
Q  787 acaccgataaatttttgagggaatgacataattcaatctaatcacaagtgtcggtgt 843  Q
    |||||||| || |||||||  |||||||||||||| | |||||||||||||||||||    
T  22801799 acaccgatcaaattttgagataatgacataattcactgtaatcacaagtgtcggtgt 22801743  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 808 - 843
Target Start/End: Original strand, 25956467 - 25956502
Alignment:
Q  808 aatgacataattcaatctaatcacaagtgtcggtgt 843  Q
    |||||||||||||||| |||||||||||||||||||    
T  25956467 aatgacataattcaatgtaatcacaagtgtcggtgt 25956502  T

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Target: scaffold0314 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0314
Description:

Target: scaffold0314; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 791 - 843
Target Start/End: Original strand, 8953 - 9005
Alignment:
Q  791 cgataaatttttgagggaatgacataattcaatctaatcacaagtgtcggtgt 843  Q
    ||||||| |||||||  |||||||||||||||  |||||||||||||||||||    
T  8953 cgataaaattttgagaaaatgacataattcaacgtaatcacaagtgtcggtgt 9005  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 666 - 723
Target Start/End: Complemental strand, 9656831 - 9656774
Alignment:
Q  666 gacacgtcgacactagtaaaaatttgaaaaaaggaattatttgaatgtaatcacatga 723  Q
    ||||||| ||||||  ||| |||||||||||| || ||| ||||||||||||||||||    
T  9656831 gacacgtagacactgttaataatttgaaaaaatgatttaattgaatgtaatcacatga 9656774  T

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