View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4915-Insertion-11 (Length: 310)
Name: NF4915-Insertion-11
Description: NF4915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4915-Insertion-11 |
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| [»] chr1 (1 HSPs) |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 14 - 310
Target Start/End: Complemental strand, 28734393 - 28734097
Alignment:
| Q |
14 |
aatgtaaaacagaaagaacaaaatgtgatcaaaacaatgtatcttcgaa-catgttgtgacactactttgttaaggcaaatattctccaaggattgtttg |
112 |
Q |
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| T |
28734393 |
aatgtaaaacaggaagagcaaaatgtgatcaaaacaatgtatcttcaaaacat-ttgtgacactactttgttaaggcaaatattctccaaggattgtttg |
28734295 |
T |
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| Q |
113 |
aatggtgatcaagggagaggatgcccaacatataataatataaagcaaacaagtacaatcaaacatgagttaaagcatttactcaacatgggaactaaca |
212 |
Q |
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| T |
28734294 |
aatggtgatcaaaccagaggatgcccaacatataataatataaagcaaacaagtacaatcaaacatgagttaaagcatttactcaacatggtaattaaca |
28734195 |
T |
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| Q |
213 |
agaatgtaaagaagcatattatacatagttacgcaaccttgcatatatctatctattgatgattcttcttccacaacactccaatcttcttcaacatg |
310 |
Q |
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| T |
28734194 |
agaacgtaaagaagcatattatacatagttacgcaaccttgcatatatctatctattgatgattcttcttccacaacactccaatcttcttcaacatg |
28734097 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 269 - 310
Target Start/End: Complemental strand, 22111065 - 22111024
Alignment:
| Q |
269 |
tgatgattcttcttccacaacactccaatcttcttcaacatg |
310 |
Q |
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| T |
22111065 |
tgatgattcttcctccacaacactccaatcttcttcagcatg |
22111024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 269 - 310
Target Start/End: Original strand, 40583524 - 40583565
Alignment:
| Q |
269 |
tgatgattcttcttccacaacactccaatcttcttcaacatg |
310 |
Q |
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| T |
40583524 |
tgatgattcttcctccacaacactccaatcttcttcagcatg |
40583565 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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