View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4915-Insertion-2 (Length: 525)

Name: NF4915-Insertion-2
Description: NF4915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4915-Insertion-2
NF4915-Insertion-2
[»] chr8 (2 HSPs)
chr8 (39-477)||(32019445-32019889)
chr8 (420-464)||(40642366-40642410)
[»] chr3 (1 HSPs)
chr3 (21-479)||(47955629-47956095)
[»] chr7 (4 HSPs)
chr7 (20-186)||(38095172-38095338)
chr7 (412-479)||(38095440-38095507)
chr7 (420-479)||(26788987-26789046)
chr7 (474-522)||(40261512-40261560)
[»] chr2 (5 HSPs)
chr2 (20-148)||(2757883-2758011)
chr2 (55-186)||(26179317-26179448)
chr2 (412-479)||(26179552-26179619)
chr2 (200-315)||(16427336-16427454)
chr2 (432-479)||(2757820-2757867)
[»] chr1 (2 HSPs)
chr1 (474-522)||(38002950-38002998)
chr1 (474-522)||(38003607-38003655)


Alignment Details
Target: chr8 (Bit Score: 184; Significance: 2e-99; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 39 - 477
Target Start/End: Original strand, 32019445 - 32019889
Alignment:
Q  39 aaaagcaacattaaggaattcatccaactttattatgttgatgtggattaaaatcgcttccttcatcctaaaattgaatatttattatgtttagacatca 138  Q
    ||||||||||||||| |||||||||||||||||||||| |||||| ||||||||| |||||||||||| |||||||| ||||||||| || |||||||||    
T  32019445 aaaagcaacattaagcaattcatccaactttattatgtcgatgtgaattaaaatcacttccttcatccaaaaattga-tatttattacgtatagacatca 32019543  T
Q  139 aacttcacgccttaaaagctaaggttttatctcagatttttccattaagccnnnnnnn--------cattagatagaagataatccttgttattgctttt 230  Q
    |||||| ||||| |||||||||||||||||||||| | |||||||||||||               || || |||||||||  || ||||||||||||||    
T  32019544 aacttctcgcctcaaaagctaaggttttatctcaggtctttccattaagcctttttttttttttttcactaaatagaagatggtcattgttattgctttt 32019643  T
Q  231 ccatattttgttttatatttcctttaatccttctattaatccattttccactaaatagtatgaagcatgtgtgagtataaagaagttcattgaacagcct 330  Q
    |||| ||||  |||||||||||||||||||||| |||| |||||||| |||||||||||||| |||||||||||||| |||||||||| ||||||||| |    
T  32019644 ccatttttt--tttatatttcctttaatccttccattattccatttttcactaaatagtatggagcatgtgtgagtacaaagaagttcgttgaacagctt 32019741  T
Q  331 ggtgtggcactgcagctatcattacttggtcgttgtatgaaaagcaaag-tgaatggtagggggagccgtttttccggcagaga-agcttagttaacaga 428  Q
    | |||||||||   ||||||||| || || | ||||||||||||||||| ||||| |||||||| |  |||||| || ||||||  ||||||||||||||    
T  32019742 gctgtggcacttttgctatcattgctcggccattgtatgaaaagcaaagatgaattgtaggggg-gtagttttttcgacagagagggcttagttaacaga 32019840  T
Q  429 gaactaacagtgttacatgataggggaggtgtttgtatatttgaataaa 477  Q
    |||||||| |||||| || |||||||||| ||||||| |||||||||||    
T  32019841 gaactaacggtgttatataataggggaggcgtttgtagatttgaataaa 32019889  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 420 - 464
Target Start/End: Original strand, 40642366 - 40642410
Alignment:
Q  420 gttaacagagaactaacagtgttacatgataggggaggtgtttgt 464  Q
    |||| ||||| || |||||||||||||||||||||||||||||||    
T  40642366 gttaccagagcaccaacagtgttacatgataggggaggtgtttgt 40642410  T

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Target: chr3 (Bit Score: 169; Significance: 2e-90; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 21 - 479
Target Start/End: Original strand, 47955629 - 47956095
Alignment:
Q  21 ttccttatccaattctacaaaagcaacattaaggaattcatccaactttattatgttgatgtggattaaaatcgcttccttcatcctaaaattgaatatt 120  Q
    |||||| ||||||||| ||||||| || ||||| ||||||||||| ||||||||||||||||| |||| |||| ||||||||||||||||||||||||||    
T  47955629 ttccttctccaattctgcaaaagccacgttaagcaattcatccaattttattatgttgatgtgaattacaatcacttccttcatcctaaaattgaatatt 47955728  T
Q  121 tattatgtttagacatcaaacttcacgccttaaaagctaaggttttatctcagatttttccattaagccnnnnnnncattagatagaagataatccttgt 220  Q
    | ||||||| || ||||||||||||||||| ||||||| ||||||||| |||| | |||||||||| ||       || ||| |||||||||||| ||||    
T  47955729 ttttatgttgag-catcaaacttcacgcctcaaaagctgaggttttatttcagttctttccattaatcc-atttttcactaggtagaagataatcattgt 47955826  T
Q  221 tattgcttttccatattt-----tgttttatatttcctttaatccttctattaatccattttccactaaatagtatgaagcatgtgtgagtataaagaag 315  Q
    |||| |||||||||||||     | ||||||||||| | ||||||||| |||| ||||||||||||||||||||||||||||  ||||||||||||||||    
T  47955827 tattccttttccatatttatttattttttatatttcatgtaatccttccattagtccattttccactaaatagtatgaagca--tgtgagtataaagaag 47955924  T
Q  316 ttcattgaacagcctggtgtggcactgcagctatcattacttggtcgttgtatgaaaa--gcaaag------tgaatggtagggggagccgtttttccgg 407  Q
    ||| ||||||||||||||||||||| |  || || |||  |||| ||||||||| |||  | ||||      ||||||||||||||||  |||||| ||     
T  47955925 ttcgttgaacagcctggtgtggcaccgtggccattattgtttgg-cgttgtatgcaaattgtaaagcatagatgaatggtagggggagtagttttttcga 47956023  T
Q  408 cagagaagcttagttaacagagaactaacagtgttacatgataggggaggtgtttgtatatttgaataaaaa 479  Q
    ||  |||||| |||||||||||||| ||| ||||||||||| ||||| |||||||||| |||||| ||||||    
T  47956024 caaggaagctaagttaacagagaaccaacggtgttacatgacaggggtggtgtttgtagatttgattaaaaa 47956095  T

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Target: chr7 (Bit Score: 111; Significance: 9e-56; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 20 - 186
Target Start/End: Original strand, 38095172 - 38095338
Alignment:
Q  20 cttccttatccaattctacaaaagcaacattaaggaattcatccaactttattatgttgatgtggattaaaatcgcttccttcatcctaaaattgaatat 119  Q
    ||||||| || |||| | |||||||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||    
T  38095172 cttccttctctaattgtccaaaagcaacattaagcaattcatccaactttattatgttgatgtgaattacaatcgcttccttcatcctaaaattgaatat 38095271  T
Q  120 ttattatgtttagacatcaaacttcacgccttaaaagctaaggttttatctcagatttttccattaa 186  Q
    |||| | |||||| ||||||||||||||||| ||||||||||||||||| |||| | ||||||||||    
T  38095272 ttatcacgtttaggcatcaaacttcacgcctcaaaagctaaggttttatttcaggtctttccattaa 38095338  T

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Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 412 - 479
Target Start/End: Original strand, 38095440 - 38095507
Alignment:
Q  412 gaagcttagttaacagagaactaacagtgttacatgataggggaggtgtttgtatatttgaataaaaa 479  Q
    ||||||||||||||||||||||||| ||||||||||||||||| |||||||||| || ||||||||||    
T  38095440 gaagcttagttaacagagaactaacggtgttacatgataggggtggtgtttgtagatatgaataaaaa 38095507  T

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Target: chr7; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 420 - 479
Target Start/End: Original strand, 26788987 - 26789046
Alignment:
Q  420 gttaacagagaactaacagtgttacatgataggggaggtgtttgtatatttgaataaaaa 479  Q
    ||||||| ||||||||||||||||||||||||||| |||||||||| |||||||||||||    
T  26788987 gttaacacagaactaacagtgttacatgataggggtggtgtttgtagatttgaataaaaa 26789046  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 474 - 522
Target Start/End: Original strand, 40261512 - 40261560
Alignment:
Q  474 taaaaactagagggaatgtcagtgctatttaagaataccttaagggagg 522  Q
    |||||||||||||| |||| ||||  || ||||||||||||||||||||    
T  40261512 taaaaactagaggggatgttagtgtcatataagaataccttaagggagg 40261560  T

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Target: chr2 (Bit Score: 101; Significance: 8e-50; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 20 - 148
Target Start/End: Complemental strand, 2758011 - 2757883
Alignment:
Q  20 cttccttatccaattctacaaaagcaacattaaggaattcatccaactttattatgttgatgtggattaaaatcgcttccttcatcctaaaattgaatat 119  Q
    ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| ||| |||||||| || |||||||||    
T  2758011 cttccttctccaattctacaaaagcaacattaagcaattcatccaactttattatgttgatgtgaattaaaatcacttgcttcatccaaatattgaatat 2757912  T
Q  120 ttattatgtttagacatcaaacttcacgc 148  Q
    |||||||||||||||||||||||||||||    
T  2757911 ttattatgtttagacatcaaacttcacgc 2757883  T

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Target: chr2; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 55 - 186
Target Start/End: Original strand, 26179317 - 26179448
Alignment:
Q  55 aattcatccaactttattatgttgatgtggattaaaatcgcttccttcatcctaaaattgaatatttattatgtttagacatcaaacttcacgccttaaa 154  Q
    ||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| ||| | |||||| ||||||||||||||||| |||    
T  26179317 aattcatccaactttattatgttgatgtgaattacaatcgcttccttcatcctaaaattgaatatctatcacgtttaggcatcaaacttcacgcctcaaa 26179416  T
Q  155 agctaaggttttatctcagatttttccattaa 186  Q
    |||||||||||||| |||| | ||||||||||    
T  26179417 agctaaggttttatttcaggtctttccattaa 26179448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 412 - 479
Target Start/End: Original strand, 26179552 - 26179619
Alignment:
Q  412 gaagcttagttaacagagaactaacagtgttacatgataggggaggtgtttgtatatttgaataaaaa 479  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||    
T  26179552 gaagcttagttaacagagaactaacagtgttacatgataggggtggtgtttgtagatttgaataaaaa 26179619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 200 - 315
Target Start/End: Complemental strand, 16427454 - 16427336
Alignment:
Q  200 tagatagaagataatccttgttattgcttttccatattt-----tgttttatatttcctttaatccttctattaatccattttccactaaatagtatgaa 294  Q
    |||||||| ||||||  ||||||||  ||||||||||||     | ||||||||||| | ||||||||| |||| |||||||| ||||||||||||||||    
T  16427454 tagatagaggataattattgttattctttttccatatttatttattttttatatttcttgtaatccttccattagtccatttttcactaaatagtatgaa 16427355  T
Q  295 gcatgtgtgagtataaagaag 315  Q
    |||  ||||||||||||||||    
T  16427354 gca--tgtgagtataaagaag 16427336  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 432 - 479
Target Start/End: Complemental strand, 2757867 - 2757820
Alignment:
Q  432 ctaacagtgttacatgataggggaggtgtttgtatatttgaataaaaa 479  Q
    ||||| |||||||||||||||||||||| ||||| |||| ||||||||    
T  2757867 ctaacggtgttacatgataggggaggtgcttgtaaatttaaataaaaa 2757820  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 474 - 522
Target Start/End: Complemental strand, 38002998 - 38002950
Alignment:
Q  474 taaaaactagagggaatgtcagtgctatttaagaataccttaagggagg 522  Q
    |||||||||||||| |||| ||||||||||||||| |||| ||||||||    
T  38002998 taaaaactagaggggatgttagtgctatttaagaaaacctaaagggagg 38002950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 474 - 522
Target Start/End: Original strand, 38003607 - 38003655
Alignment:
Q  474 taaaaactagagggaatgtcagtgctatttaagaataccttaagggagg 522  Q
    |||||| |||||||  ||| ||||||||||||||| |||||||||||||    
T  38003607 taaaaagtagaggggttgttagtgctatttaagaagaccttaagggagg 38003655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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