View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4915-Insertion-3 (Length: 444)
Name: NF4915-Insertion-3
Description: NF4915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4915-Insertion-3 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 416; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 5 - 444
Target Start/End: Original strand, 5216642 - 5217081
Alignment:
| Q |
5 |
acagtttttcattctcgtgttgatagagagattgaaacgcttactgaaagattacatccagccaggtaacactttgttttatgcgattaattatattccg |
104 |
Q |
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| T |
5216642 |
acagtttttcattctcgtgttgatagagagattgaaacgcttactgaaagattacatccagccaggtaacactttgttttatgtgattaattatattccg |
5216741 |
T |
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| Q |
105 |
attagttaattaattatgtagattactttatgagtacgtaattaattttctgttaattggcagggtttgtatagataataatacttgtaaagactgcact |
204 |
Q |
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| T |
5216742 |
attagttaattaattatgttgattactttatgagtacgtaattaattttctgttaattggcagggtttgtatagataataatacttgtaaagactgcact |
5216841 |
T |
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| Q |
205 |
gttgtgaaggttcgatacaattctctaatttatttaattccttatgtcttgttttgtagtgaccttgcaaacttcaaaataaatcatgcctcttatgtat |
304 |
Q |
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| T |
5216842 |
gttgtgaaggttcgatacaattctctaatttatttaattccttatgtcttgttttgtagtgaccttgcaaagttcaaaataaatcatgcctcttatgtat |
5216941 |
T |
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| Q |
305 |
ctagacatttaatttggtaggtattctctgaaaatgacgtcatcctgttatcatattagagtcggtttattcataaaatgtaccaaaaaaggacacacca |
404 |
Q |
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| T |
5216942 |
atagacatttaatttggtaggtattctctgaaaatgacgtcatcctgttatcaaattagagtcggtttattcataaaatgtaccaaaaaaggacacacca |
5217041 |
T |
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| Q |
405 |
gtttagaaattggaagacatatgaagtacagaaacctacg |
444 |
Q |
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| T |
5217042 |
gtttagaaattggaaggcatatgaagtacagaaacctacg |
5217081 |
T |
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