View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4915-Insertion-4 (Length: 412)

Name: NF4915-Insertion-4
Description: NF4915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4915-Insertion-4
NF4915-Insertion-4
[»] chr4 (1 HSPs)
chr4 (8-412)||(5139952-5140361)


Alignment Details
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 8 - 412
Target Start/End: Original strand, 5139952 - 5140361
Alignment:
Q  8 gtggttgcgtcggtgaaagtgaaggtggagttgttgaaaaggtggttgggtgaaacggcgtcgttggagatggtggttaaattggggatgttacgccacg 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||    
T  5139952 gtggttgcgtcggtgaaagtgaaggtggagttgttgaaaaggtggttgggtgaaacggcgtcgtcggagatggtggttaaattagggatgttacgccacg 5140051  T
Q  108 tggcgacagttttgttcgttgtgtctgtcatagggataagtttgatggttttggtatactgcgtgtgttttggttatgctcacatcaagattgaattttt 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5140052 tggcgacagttttgttcgttgtgtctgtcatagggataagtttgatggttttggtatactgcgtgtgttttggttatgctcacatcaagattgaattttt 5140151  T
Q  208 accaactatatttcaacaa---tannnnnnnnnnnngagcaattcaacaacttttatttttcatacacattctta-ttaannnnnnnnnnatcag-aaaa 302  Q
    ||||||||||||||||| |   |             ||||||||||||||||||||||||||||||||||||||| ||||          ||||| ||||    
T  5140152 accaactatatttcaactaattttttttttttttttgagcaattcaacaacttttatttttcatacacattcttatttaattttttttttatcagaaaaa 5140251  T
Q  303 gnnnnnnnnntagtgatatttgaacaacatctaagacaattttggtatttaattacattttccactataacatgattaaaatgttccttctaaaccatgt 402  Q
    |         ||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |||||||||||||||||||||||||||||    
T  5140252 gaaaaaaaaatagtgatatttgaacaacatctaagacaattttggtacttaattatattttccactataatatgattaaaatgttccttctaaaccatgt 5140351  T
Q  403 caaagctcaa 412  Q
    ||||||||||    
T  5140352 caaagctcaa 5140361  T

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