View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4915-Insertion-7 (Length: 425)
Name: NF4915-Insertion-7
Description: NF4915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4915-Insertion-7 |
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Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-121; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 10 - 253
Target Start/End: Original strand, 47518489 - 47518730
Alignment:
| Q |
10 |
aagtgaacaatattacaacttatttagacccaaataatggttgtatccaggttcctcccctgtaacaaatgtaatgtattcaaactaataattagaaaac |
109 |
Q |
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| T |
47518489 |
aagtgaacaatattacaacttatttagacctaaataatggttgtatccaggttcctcccatgtaacaaatgtaatgtattcaaactaataattagaaaac |
47518588 |
T |
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| Q |
110 |
aatccactaatgtgacacaaactttcatggagagcaaagtttcatgtatatgcttcatttgttcatgcacatcttctacacaactaggccactctccaat |
209 |
Q |
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| T |
47518589 |
aatccactaatgtgacacaaactttcatggagagcaaagtttcatgtatgtgcttcatttgttcatgcacatcttct--acaactaggccactctccaat |
47518686 |
T |
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| Q |
210 |
tattcatttcattgccaaatcaaaagcataaccaaatacaattt |
253 |
Q |
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| T |
47518687 |
tattcatttcattgccaaatcaaaagcataaccaaatacaattt |
47518730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 310 - 425
Target Start/End: Original strand, 47518787 - 47518902
Alignment:
| Q |
310 |
agtttgtttatcagtgactaattgatcttatattcaagagcattacacacacgagcatgtcaatctcatgccattgaaaccatcattgaagcaatgacat |
409 |
Q |
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| T |
47518787 |
agtttgtttatcagtgactaattgatcttatattcaagaacattacacacacgagcatgtcaatctcatgccactgaaaccatcattgaagcaatgacat |
47518886 |
T |
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| Q |
410 |
agacccagacacccga |
425 |
Q |
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| T |
47518887 |
agacccagacacccga |
47518902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 138 - 253
Target Start/End: Original strand, 47513951 - 47514067
Alignment:
| Q |
138 |
ggagagcaaagtttcatgtatatgcttcatttgttcatgcacatcttctac-acaactaggccactctccaattattcatttcattgccaaatcaaaagc |
236 |
Q |
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|||||||||| ||||||||| |||||| ||||||| ||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47513951 |
ggagagcaaaatttcatgtacatgctttatttgtttatgcacatcttcttctacaactaggccactctccaattattcatttcattgccaaatcaaaagc |
47514050 |
T |
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| Q |
237 |
ataaccaaatacaattt |
253 |
Q |
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| T |
47514051 |
ataactaagtacaattt |
47514067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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