View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4915_high_4 (Length: 284)
Name: NF4915_high_4
Description: NF4915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4915_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 11 - 268
Target Start/End: Complemental strand, 6108415 - 6108156
Alignment:
| Q |
11 |
caaagggcaagctggtctccaacactgatgaaatttgaagcgccgaaagaatgatccaagaatnnnnnnntatgcaagttaggcatgccaaactcttggt |
110 |
Q |
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| T |
6108415 |
caaagggcaagctggtctccaacactgatgaaatttgaagcgccgaaagaatgatccaagaataaaaaaatatgcaagttaggcatgccaaactcttggt |
6108316 |
T |
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| Q |
111 |
ccaccttgggcctttcactaaacatgttaaatggtgtcaagtcgatgccacagaacaccacaagcttcccatgcatttgacatgtaattgtcacatatac |
210 |
Q |
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| T |
6108315 |
ccaccttgggcctttcactaaacatgttaaatggtgtcaagtcgatgccacagaacaccacaagcttcccatgcatttgacatgtaattgtcacagatac |
6108216 |
T |
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| Q |
211 |
acctacctagctcttcagaagtctttacat--atatatctacttaggtatagcatgtttc |
268 |
Q |
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| T |
6108215 |
gcctacctagctcttcagaagtctttacatacatatatctacttaagtatagcatgtttc |
6108156 |
T |
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