View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4915_high_5 (Length: 225)

Name: NF4915_high_5
Description: NF4915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4915_high_5
NF4915_high_5
[»] chr4 (2 HSPs)
chr4 (1-148)||(21435250-21435397)
chr4 (144-225)||(21441741-21441822)
[»] chr3 (3 HSPs)
chr3 (120-218)||(4306499-4306597)
chr3 (72-194)||(24303600-24303721)
chr3 (113-176)||(23825440-23825503)
[»] chr5 (1 HSPs)
chr5 (78-163)||(40338202-40338286)
[»] chr1 (2 HSPs)
chr1 (72-205)||(25472517-25472652)
chr1 (119-197)||(41667024-41667102)
[»] chr7 (2 HSPs)
chr7 (120-218)||(31600036-31600134)
chr7 (117-218)||(20462697-20462798)
[»] scaffold0633 (1 HSPs)
scaffold0633 (119-197)||(8125-8203)


Alignment Details
Target: chr4 (Bit Score: 124; Significance: 6e-64; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 21435250 - 21435397
Alignment:
Q  1 tcatctacttgttatatctatcatatcagtgtcttgttctccttaatttgaaggtgtatattcctacatagaggggtggaggcaggaatttaaagttagg 100  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||    
T  21435250 tcatctacttgttacatctatcatatcagtgtcttgttctccttaatttgaaggtatatattcctacatagagggatggaggcaggaatttaaagttagg 21435349  T
Q  101 agaaccaagtataaaaaacataatttgattttaaaaacaattgtttaa 148  Q
    |||||| ||||||||||| ||||||||||||||||||||||| |||||    
T  21435350 agaaccgagtataaaaaatataatttgattttaaaaacaattttttaa 21435397  T

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Target: chr4; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 144 - 225
Target Start/End: Original strand, 21441741 - 21441822
Alignment:
Q  144 tttaaatacaaaaggtatatgtgaaactctaaacatatattttcttgtttgttacagaaattacaaactatattttttgata 225  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  21441741 tttaaatacaaaaggtatatgtgaaactctaaacatatattttcttgtttgttacagaaatttcaaactatattttttgata 21441822  T

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Target: chr3 (Bit Score: 47; Significance: 5e-18; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 120 - 218
Target Start/End: Original strand, 4306499 - 4306597
Alignment:
Q  120 ataatttgattttaaaaacaattgtttaaatacaaaaggtatatgtgaaactctaaacatatattttcttgtttgttacagaaattacaaactatattt 218  Q
    |||||||||||  ||||| |||| |||||||||||||||||||||  |||| ||||||| |||||||||||||||||| ||| |||   ||||||||||    
T  4306499 ataatttgattaaaaaaataattatttaaatacaaaaggtatatgataaaccctaaacaaatattttcttgtttgttaaagagatttataactatattt 4306597  T

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Target: chr3; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 72 - 194
Target Start/End: Original strand, 24303600 - 24303721
Alignment:
Q  72 aggggtggaggcaggaatttaaagttaggagaaccaagtataaaaaacataatttgattttaaaaacaattgtttaaatacaaaaggtatatgtgaaact 171  Q
    ||||| ||||| |||||||||||| |||| ||||| ||||||   ||||||||||||||  ||||| ||||||||||| |||||||||||||  |||||     
T  24303600 aggggcggaggtaggaatttaaagctaggggaaccgagtatatggaacataatttgatta-aaaaataattgtttaaaaacaaaaggtatataagaaaca 24303698  T
Q  172 ctaaacatatattttcttgtttg 194  Q
    ||||||  |||||||||| ||||    
T  24303699 ctaaactaatattttcttttttg 24303721  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 113 - 176
Target Start/End: Original strand, 23825440 - 23825503
Alignment:
Q  113 aaaaaacataatttgattttaaaaacaattgtttaaatacaaaaggtatatgtgaaactctaaa 176  Q
    ||||||||||||||||||  || || ||||||||||||| |||||||||||  ||||| |||||    
T  23825440 aaaaaacataatttgattaaaagaataattgtttaaatataaaaggtatataagaaaccctaaa 23825503  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 78 - 163
Target Start/End: Complemental strand, 40338286 - 40338202
Alignment:
Q  78 ggaggcaggaatttaaagttaggagaaccaagtataaaaaacataatttgattttaaaaacaattgtttaaatacaaaaggtatat 163  Q
    |||||| ||||||||||| |||| | ||| ||||||  ||||||||||||| || ||||| ||||||||||| |||||||||||||    
T  40338286 ggaggcgggaatttaaagctagggggaccgagtatatgaaacataatttga-ttaaaaaataattgtttaaaaacaaaaggtatat 40338202  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 72 - 205
Target Start/End: Complemental strand, 25472652 - 25472517
Alignment:
Q  72 aggggtggaggcaggaatttaaagttaggagaaccaagtataaaaaacataatttgattttaaaaacaattgtttaaatacaaaaggtatatgtgaaact 171  Q
    |||| ||||| |||||||||||| ||||| | ||| |||||||| | |||||||| | || ||||| |||| |||||||| |||||||||||  |||||     
T  25472652 agggatggagtcaggaatttaaaattagggggaccgagtataaatagcataattt-aattaaaaaataattttttaaatagaaaaggtatataagaaacg 25472554  T
Q  172 ctaaac--atatat-tttcttgtttgttacagaaatt 205  Q
    ||||||  |||||| ||| |||||||||| |||||||    
T  25472553 ctaaactaatatatattttttgtttgttaaagaaatt 25472517  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 197
Target Start/End: Original strand, 41667024 - 41667102
Alignment:
Q  119 cataatttgattttaaaaacaattgtttaaatacaaaaggtatatgtgaaactctaaacatatattttcttgtttgtta 197  Q
    ||||||||||||  || || ||||||||||||| |||||||||||   |||| ||||||  ||||||||||| ||||||    
T  41667024 cataatttgattgaaagaataattgtttaaatataaaaggtatataataaaccctaaactaatattttcttgcttgtta 41667102  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 120 - 218
Target Start/End: Original strand, 31600036 - 31600134
Alignment:
Q  120 ataatttgattttaaaaacaattgtttaaatacaaaaggtatatgtgaaactctaaacatatattttcttgtttgttacagaaattacaaactatattt 218  Q
    |||||||||||  || || || |||||||||| ||||||||||| |||||  ||||||  ||||||| |||||||||| |||||||   ||||||||||    
T  31600036 ataatttgattaaaacaataactgtttaaatataaaaggtatatatgaaatcctaaactaatatttttttgtttgttaaagaaatttataactatattt 31600134  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 218
Target Start/End: Original strand, 20462697 - 20462798
Alignment:
Q  117 aacataatttgattttaaaaacaattgtttaaatacaaaaggtatatgtgaaactctaaacatatattttcttgtttgttacagaaattacaaactatat 216  Q
    ||||||||||||||  || || ||||||||||||| ||||  |||||  ||||  ||||||  || ||||||||||||||| |||||||   ||||||||    
T  20462697 aacataatttgattaaaagaataattgtttaaatataaaatatatataagaaatcctaaactaatcttttcttgtttgttaaagaaatttataactatat 20462796  T
Q  217 tt 218  Q
    ||    
T  20462797 tt 20462798  T

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Target: scaffold0633 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0633
Description:

Target: scaffold0633; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 197
Target Start/End: Complemental strand, 8203 - 8125
Alignment:
Q  119 cataatttgattttaaaaacaattgtttaaatacaaaaggtatatgtgaaactctaaacatatattttcttgtttgtta 197  Q
    ||||||||||||  || || ||||||||||||| |||||||||||   |||| ||||||  ||||||||||| ||||||    
T  8203 cataatttgattgaaagaataattgtttaaatataaaaggtatataataaaccctaaactaatattttcttgcttgtta 8125  T

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