View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4915_low_1 (Length: 496)

Name: NF4915_low_1
Description: NF4915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4915_low_1
NF4915_low_1
[»] chr7 (3 HSPs)
chr7 (27-104)||(11831175-11831252)
chr7 (27-88)||(37130523-37130584)
chr7 (27-75)||(11831134-11831182)
[»] chr2 (3 HSPs)
chr2 (18-130)||(41318923-41319035)
chr2 (27-121)||(6128498-6128592)
chr2 (29-143)||(6127853-6127967)
[»] chr1 (1 HSPs)
chr1 (429-484)||(47518419-47518474)
[»] chr4 (1 HSPs)
chr4 (55-130)||(44524092-44524167)
[»] chr8 (6 HSPs)
chr8 (27-118)||(7495614-7495705)
chr8 (95-152)||(19143718-19143775)
chr8 (95-152)||(19108744-19108801)
chr8 (27-88)||(19143602-19143663)
chr8 (85-152)||(19143315-19143382)
chr8 (39-88)||(19108633-19108682)


Alignment Details
Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 27 - 104
Target Start/End: Complemental strand, 11831252 - 11831175
Alignment:
Q  27 gtaaagaataatgaagactcaacaattaatgaatcaaatcaagacaaatcaaacaaaccattggaaagtaatttgtct 104  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  11831252 gtaaagaataatgaagactcaactattaatgaatcaaatcaagacaaatcaaacaaactattggaaagtaatttgtct 11831175  T

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Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 27 - 88
Target Start/End: Original strand, 37130523 - 37130584
Alignment:
Q  27 gtaaagaataatgaagactcaacaattaatgaatcaaatcaagacaaatcaaacaaaccatt 88  Q
    ||||||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||    
T  37130523 gtaaagaataatgaaaactcaactattaatgaatcaaatcaagacaaatcaaaaaaaccatt 37130584  T

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Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 27 - 75
Target Start/End: Original strand, 11831134 - 11831182
Alignment:
Q  27 gtaaagaataatgaagactcaacaattaatgaatcaaatcaagacaaat 75  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||    
T  11831134 gtaaagaataatgaagactcaactattaatgaatcaaatcaagacaaat 11831182  T

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Target: chr2 (Bit Score: 65; Significance: 2e-28; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 18 - 130
Target Start/End: Original strand, 41318923 - 41319035
Alignment:
Q  18 cttataacagtaaagaataatgaagactcaacaattaatgaatcaaatcaagacaaatcaaacaaaccattggaaagtaatttgtctgaatgcattgcct 117  Q
    ||||| || ||||||||||||||||| ||  |  ||||||||||||||||||| ||||||||||||||||||||||| ||| ||| |||||||| |||||    
T  41318923 cttattactgtaaagaataatgaagattcctctcttaatgaatcaaatcaagagaaatcaaacaaaccattggaaaggaatatgtgtgaatgcaatgcct 41319022  T
Q  118 taatacatggagt 130  Q
    |||||||||||||    
T  41319023 taatacatggagt 41319035  T

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Target: chr2; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 27 - 121
Target Start/End: Complemental strand, 6128592 - 6128498
Alignment:
Q  27 gtaaagaataatgaagactcaacaattaatgaatcaaatcaagacaaatcaaacaaaccattggaaagtaatttgtctgaatgcattgccttaat 121  Q
    ||||||||| | ||||| ||| ||| ||||| ||||||||||||||| |||||||||||||||||||  ||||| |||||||||||| |||||||    
T  6128592 gtaaagaatcaagaagattcatcaagtaatggatcaaatcaagacaagtcaaacaaaccattggaaaacaatttatctgaatgcattaccttaat 6128498  T

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Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 29 - 143
Target Start/End: Original strand, 6127853 - 6127967
Alignment:
Q  29 aaagaataatgaagactcaacaattaatgaatcaaatcaagacaaatcaaacaaaccattggaaagtaatttgtctgaatgcattgccttaatacatgga 128  Q
    ||||||| | ||||| ||| ||| ||||| ||||||| ||||||| ||||||||||||||| |||  ||||| |||||| ||||||||||||| ||||||    
T  6127853 aaagaatcaagaagattcatcaagtaatggatcaaattaagacaagtcaaacaaaccattgaaaaacaatttatctgaacgcattgccttaattcatgga 6127952  T
Q  129 gtaaagacaaataat 143  Q
     ||||  ||||||||    
T  6127953 ataaaatcaaataat 6127967  T

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Target: chr1 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 429 - 484
Target Start/End: Complemental strand, 47518474 - 47518419
Alignment:
Q  429 ataactcacttttgttccaaaataagttacagctcgcttcttgatttatagatatt 484  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47518474 ataactcacttttgttccaaaataagttacagctcgcttcttgatttatagatatt 47518419  T

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Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 55 - 130
Target Start/End: Complemental strand, 44524167 - 44524092
Alignment:
Q  55 atgaatcaaatcaagacaaatcaaacaaaccattggaaagtaatttgtctgaatgcattgccttaatacatggagt 130  Q
    |||||||||||||||| ||||||||||||||||||||||| ||| ||| |||||| | ||||||||||||||||||    
T  44524167 atgaatcaaatcaagagaaatcaaacaaaccattggaaaggaatatgtgtgaatgtaatgccttaatacatggagt 44524092  T

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Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 27 - 118
Target Start/End: Complemental strand, 7495705 - 7495614
Alignment:
Q  27 gtaaagaataatgaagactcaacaattaatgaatcaaatcaagacaaatcaaacaaaccattggaaagtaatttgtctgaatgcattgcctt 118  Q
    ||||||||| ||||||| ||  |||| |||  ||||||| || ||||||||||||||||||| |||| ||||||||||||||||||||||||    
T  7495705 gtaaagaatcatgaagattcctcaatcaatagatcaaatgaaaacaaatcaaacaaaccattagaaaataatttgtctgaatgcattgcctt 7495614  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 95 - 152
Target Start/End: Original strand, 19143718 - 19143775
Alignment:
Q  95 taatttgtctgaatgcattgccttaatacatggagtaaagacaaataatattcataaa 152  Q
    |||||| ||||||||||||||||||||||||||| ||||  |||||||||||||||||    
T  19143718 taatttatctgaatgcattgccttaatacatggaataaaatcaaataatattcataaa 19143775  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 95 - 152
Target Start/End: Original strand, 19108744 - 19108801
Alignment:
Q  95 taatttgtctgaatgcattgccttaatacatggagtaaagacaaataatattcataaa 152  Q
    |||||| ||| ||||||||||||||||||||||| ||||  ||||||||| |||||||    
T  19108744 taatttatctaaatgcattgccttaatacatggaataaaatcaaataatactcataaa 19108801  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 27 - 88
Target Start/End: Original strand, 19143602 - 19143663
Alignment:
Q  27 gtaaagaataatgaagactcaacaattaatgaatcaaatcaagacaaatcaaacaaaccatt 88  Q
    ||||||||| | ||||| ||| ||| |||||| |||||||||||||| ||||||||||||||    
T  19143602 gtaaagaatcaagaagattcatcaagtaatgattcaaatcaagacaagtcaaacaaaccatt 19143663  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 85 - 152
Target Start/End: Original strand, 19143315 - 19143382
Alignment:
Q  85 cattggaaagtaatttgtctgaatgcattgccttaatacatggagtaaagacaaataatattcataaa 152  Q
    |||| |||| |||||| |||||||| ||||| |||||||||||| ||||  |||||||||| ||||||    
T  19143315 cattagaaaataatttatctgaatgtattgcattaatacatggaataaaatcaaataatatccataaa 19143382  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 88
Target Start/End: Original strand, 19108633 - 19108682
Alignment:
Q  39 gaagactcaacaattaatgaatcaaatcaagacaaatcaaacaaaccatt 88  Q
    ||||| ||| ||| ||||| ||||||||||||||| ||||||||||||||    
T  19108633 gaagattcatcaagtaatggatcaaatcaagacaagtcaaacaaaccatt 19108682  T

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